Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0094

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0092 and Shewana3_0093 are separated by 29 nucleotidesShewana3_0093 and Shewana3_0094 are separated by 43 nucleotidesShewana3_0094 and Shewana3_0095 are separated by 90 nucleotides Shewana3_0092: Shewana3_0092 - integrase catalytic subunit (RefSeq), at 103,361 to 104,164 _0092 Shewana3_0093: Shewana3_0093 - transposase (RefSeq), at 104,194 to 104,589 _0093 Shewana3_0094: Shewana3_0094 - hypothetical protein (RefSeq), at 104,633 to 105,280 _0094 Shewana3_0095: Shewana3_0095 - hypothetical protein (RefSeq), at 105,371 to 107,278 _0095 Position (kb) 104 105 106Strain fitness (log2 ratio) -1 0 1at 103.851 kb on - strand, within Shewana3_0092at 104.385 kb on - strand, within Shewana3_0093at 104.783 kb on - strand, within Shewana3_0094at 104.792 kb on + strand, within Shewana3_0094at 104.843 kb on + strand, within Shewana3_0094at 105.130 kb on - strand, within Shewana3_0094at 105.369 kb on + strandat 105.411 kb on + strandat 105.569 kb on + strand, within Shewana3_0095at 105.570 kb on + strand, within Shewana3_0095at 105.570 kb on - strand, within Shewana3_0095at 105.570 kb on - strand, within Shewana3_0095at 105.674 kb on + strand, within Shewana3_0095at 105.725 kb on + strand, within Shewana3_0095at 105.733 kb on - strand, within Shewana3_0095at 105.800 kb on - strand, within Shewana3_0095at 105.818 kb on + strand, within Shewana3_0095at 105.821 kb on - strand, within Shewana3_0095at 105.867 kb on + strand, within Shewana3_0095at 105.867 kb on + strand, within Shewana3_0095at 105.875 kb on - strand, within Shewana3_0095at 105.875 kb on - strand, within Shewana3_0095at 105.875 kb on - strand, within Shewana3_0095at 105.922 kb on + strand, within Shewana3_0095at 105.970 kb on + strand, within Shewana3_0095at 105.978 kb on - strand, within Shewana3_0095at 105.978 kb on - strand, within Shewana3_0095at 105.978 kb on - strand, within Shewana3_0095at 106.070 kb on - strand, within Shewana3_0095at 106.101 kb on - strand, within Shewana3_0095at 106.236 kb on + strand, within Shewana3_0095at 106.275 kb on - strand, within Shewana3_0095

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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103,851 - Shewana3_0092 0.61 -1.0
104,385 - Shewana3_0093 0.48 +1.2
104,783 - Shewana3_0094 0.23 -0.9
104,792 + Shewana3_0094 0.25 +0.1
104,843 + Shewana3_0094 0.32 -0.9
105,130 - Shewana3_0094 0.77 -0.4
105,369 + -0.7
105,411 + +0.3
105,569 + Shewana3_0095 0.10 +0.4
105,570 + Shewana3_0095 0.10 -0.9
105,570 - Shewana3_0095 0.10 -0.2
105,570 - Shewana3_0095 0.10 +0.7
105,674 + Shewana3_0095 0.16 +0.0
105,725 + Shewana3_0095 0.19 +0.0
105,733 - Shewana3_0095 0.19 -1.0
105,800 - Shewana3_0095 0.22 +0.4
105,818 + Shewana3_0095 0.23 +0.5
105,821 - Shewana3_0095 0.24 +0.6
105,867 + Shewana3_0095 0.26 +0.5
105,867 + Shewana3_0095 0.26 -0.7
105,875 - Shewana3_0095 0.26 -1.5
105,875 - Shewana3_0095 0.26 +0.2
105,875 - Shewana3_0095 0.26 +0.2
105,922 + Shewana3_0095 0.29 -0.2
105,970 + Shewana3_0095 0.31 -0.3
105,978 - Shewana3_0095 0.32 -0.7
105,978 - Shewana3_0095 0.32 -1.3
105,978 - Shewana3_0095 0.32 -0.7
106,070 - Shewana3_0095 0.37 +0.7
106,101 - Shewana3_0095 0.38 +0.4
106,236 + Shewana3_0095 0.45 -0.9
106,275 - Shewana3_0095 0.47 +0.2

Or see this region's nucleotide sequence