Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0003

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_0002 and Shewana3_0003 are separated by 440 nucleotidesShewana3_0003 and Shewana3_0004 are separated by 177 nucleotides Shewana3_0002: Shewana3_0002 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq), at 777 to 2,666 _0002 Shewana3_0003: Shewana3_0003 - flavodoxin (RefSeq), at 3,107 to 3,547 _0003 Shewana3_0004: Shewana3_0004 - TGF-beta receptor, type I/II extracellular region (RefSeq), at 3,725 to 5,272 _0004 Position (kb) 3 4Strain fitness (log2 ratio) -2 -1 0 1at 2.206 kb on + strand, within Shewana3_0002at 2.214 kb on - strand, within Shewana3_0002at 2.411 kb on + strand, within Shewana3_0002at 2.466 kb on + strand, within Shewana3_0002at 2.497 kb on + strandat 2.504 kb on - strandat 3.989 kb on - strand, within Shewana3_0004at 4.049 kb on + strand, within Shewana3_0004at 4.049 kb on + strand, within Shewana3_0004at 4.057 kb on - strand, within Shewana3_0004at 4.288 kb on - strand, within Shewana3_0004at 4.438 kb on - strand, within Shewana3_0004at 4.479 kb on - strand, within Shewana3_0004at 4.492 kb on - strand, within Shewana3_0004at 4.512 kb on + strand, within Shewana3_0004

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
2,206 + Shewana3_0002 0.76 -1.3
2,214 - Shewana3_0002 0.76 -1.6
2,411 + Shewana3_0002 0.86 -2.4
2,466 + Shewana3_0002 0.89 -1.6
2,497 + -0.8
2,504 - -0.8
3,989 - Shewana3_0004 0.17 +0.1
4,049 + Shewana3_0004 0.21 -0.8
4,049 + Shewana3_0004 0.21 -1.3
4,057 - Shewana3_0004 0.21 -1.8
4,288 - Shewana3_0004 0.36 -1.5
4,438 - Shewana3_0004 0.46 +0.2
4,479 - Shewana3_0004 0.49 +0.5
4,492 - Shewana3_0004 0.50 -0.1
4,512 + Shewana3_0004 0.51 -0.2

Or see this region's nucleotide sequence