Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4247

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4246 and Shewana3_4247 are separated by 596 nucleotidesShewana3_4247 and Shewana3_4248 are separated by 8 nucleotides Shewana3_4246: Shewana3_4246 - XRE family transcriptional regulator (RefSeq), at 121,277 to 121,765 _4246 Shewana3_4247: Shewana3_4247 - TatD-related deoxyribonuclease (RefSeq), at 122,362 to 123,075 _4247 Shewana3_4248: Shewana3_4248 - hypothetical protein (RefSeq), at 123,084 to 124,388 _4248 Position (kb) 122 123 124Strain fitness (log2 ratio) -2 -1 0 1at 121.972 kb on - strandat 122.091 kb on - strandat 122.305 kb on + strandat 122.305 kb on + strandat 122.305 kb on + strandat 122.305 kb on + strandat 122.313 kb on - strandat 122.613 kb on - strand, within Shewana3_4247at 122.917 kb on + strand, within Shewana3_4247at 123.033 kb on - strandat 123.035 kb on - strandat 123.122 kb on + strandat 123.373 kb on - strand, within Shewana3_4248at 123.460 kb on + strand, within Shewana3_4248at 123.727 kb on - strand, within Shewana3_4248at 123.762 kb on - strand, within Shewana3_4248at 123.856 kb on + strand, within Shewana3_4248at 123.925 kb on + strand, within Shewana3_4248at 123.978 kb on - strand, within Shewana3_4248at 124.060 kb on + strand, within Shewana3_4248

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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121,972 - +0.7
122,091 - +0.2
122,305 + +0.7
122,305 + +1.2
122,305 + +0.7
122,305 + +1.4
122,313 - +0.6
122,613 - Shewana3_4247 0.35 -1.8
122,917 + Shewana3_4247 0.78 -0.4
123,033 - +0.4
123,035 - +0.5
123,122 + -0.8
123,373 - Shewana3_4248 0.22 -0.9
123,460 + Shewana3_4248 0.29 +0.2
123,727 - Shewana3_4248 0.49 -1.2
123,762 - Shewana3_4248 0.52 +1.0
123,856 + Shewana3_4248 0.59 +1.2
123,925 + Shewana3_4248 0.64 +0.2
123,978 - Shewana3_4248 0.69 +0.2
124,060 + Shewana3_4248 0.75 +0.2

Or see this region's nucleotide sequence