Strain Fitness in Shewanella amazonensis SB2B around Sama_3434

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
4,062,868	+		Sama_3433	0.30	-0.3
4,062,869	-		Sama_3433	0.30	-1.0
4,062,875	+		Sama_3433	0.31	-1.1
4,062,875	+		Sama_3433	0.31	+0.5
4,062,875	+		Sama_3433	0.31	-1.5
4,062,876	-		Sama_3433	0.31	-2.0
4,062,876	-		Sama_3433	0.31	-1.1
4,062,876	-		Sama_3433	0.31	-0.3
4,062,876	-		Sama_3433	0.31	-1.5
4,062,876	-		Sama_3433	0.31	+0.6
4,062,884	+		Sama_3433	0.31	-2.5
4,062,884	+		Sama_3433	0.31	+0.5
4,062,885	-		Sama_3433	0.32	-0.8
4,063,021	+		Sama_3433	0.42	-1.6
4,063,021	+		Sama_3433	0.42	-0.6
4,063,021	+		Sama_3433	0.42	-1.6
4,063,021	+		Sama_3433	0.42	-1.3
4,063,021	+		Sama_3433	0.42	-0.5
4,063,022	-		Sama_3433	0.42	-1.0
4,063,022	-		Sama_3433	0.42	+0.7
4,063,270	+		Sama_3433	0.60	-2.1
4,063,271	-		Sama_3433	0.60	-2.4
4,063,271	-		Sama_3433	0.60	-0.0
4,063,271	-		Sama_3433	0.60	-1.3
4,063,278	+		Sama_3433	0.60	-1.6
4,063,285	+		Sama_3433	0.61	-2.7
4,063,285	+		Sama_3433	0.61	-0.4
4,063,286	-		Sama_3433	0.61	-0.9
4,063,286	-		Sama_3433	0.61	-0.9
4,063,407	+		Sama_3433	0.70	+0.5
4,063,408	-		Sama_3433	0.70	-1.7
4,063,408	-		Sama_3433	0.70	-0.7
4,063,408	-		Sama_3433	0.70	-1.3
4,063,408	-		Sama_3433	0.70	-2.5
4,063,408	-		Sama_3433	0.70	-1.9
4,063,482	+		Sama_3433	0.75	+0.2
4,063,482	+		Sama_3433	0.75	-0.6
4,063,483	-		Sama_3433	0.75	+0.7
4,063,483	-		Sama_3433	0.75	-1.4
4,063,483	-		Sama_3433	0.75	-1.4
4,063,501	-		Sama_3433	0.77	+0.1
4,063,501	-		Sama_3433	0.77	-0.9
4,063,501	-		Sama_3433	0.77	-0.7
4,063,531	+		Sama_3433	0.79	-2.1
4,063,664	+		Sama_3433	0.89	-3.4
4,063,664	+		Sama_3433	0.89	+0.1
4,063,664	+		Sama_3433	0.89	-1.3
4,063,665	-		Sama_3433	0.89	-2.6
4,063,665	-		Sama_3433	0.89	-1.2
4,063,676	-		Sama_3433	0.90	-0.9
4,063,676	-		Sama_3433	0.90	-0.4
4,063,676	-		Sama_3433	0.90	-1.9
4,063,866	-				-0.3
4,063,876	-				-0.1
4,063,881	+				-0.9
4,063,881	+				+0.5
4,063,882	-				+0.2
4,063,882	-				-1.2
4,063,892	+				-2.1
4,063,892	+				-0.6
4,063,892	+				-0.5
4,063,893	-				-1.6
4,063,909	+				+0.3
4,063,909	+				-0.3
4,063,938	+				-2.3
4,063,938	+				-0.3
4,063,971	+				-1.9
4,063,972	-				-1.3
4,063,992	+				-0.0
4,063,993	-				+0.4
4,064,045	+		Sama_3434	0.10	-0.4
4,064,045	+		Sama_3434	0.10	-1.7
4,064,046	-		Sama_3434	0.10	+0.3
4,064,046	-		Sama_3434	0.10	-1.6
4,064,046	-		Sama_3434	0.10	-2.4
4,064,183	+		Sama_3434	0.18	-0.1
4,064,183	+		Sama_3434	0.18	+0.9
4,064,183	+		Sama_3434	0.18	-1.9
4,064,183	+		Sama_3434	0.18	-1.5
4,064,183	+		Sama_3434	0.18	-0.4
4,064,184	-		Sama_3434	0.18	-2.1
4,064,184	-		Sama_3434	0.18	-1.1
4,064,184	-		Sama_3434	0.18	-0.3
4,064,184	-		Sama_3434	0.18	-1.1
4,064,184	-		Sama_3434	0.18	+0.3
4,064,184	-		Sama_3434	0.18	-1.0
4,064,184	-		Sama_3434	0.18	+0.3
4,064,184	-		Sama_3434	0.18	-1.0
4,064,184	-		Sama_3434	0.18	-1.5
4,064,283	+		Sama_3434	0.23	-3.5
4,064,283	+		Sama_3434	0.23	-1.0
4,064,283	+		Sama_3434	0.23	-2.9
4,064,314	+		Sama_3434	0.25	+0.2
4,064,314	+		Sama_3434	0.25	-1.6
4,064,314	+		Sama_3434	0.25	-1.0
4,064,315	-		Sama_3434	0.25	-0.1
4,064,315	-		Sama_3434	0.25	-0.3
4,064,339	+		Sama_3434	0.26	-2.1
4,064,340	-		Sama_3434	0.26	-2.0
4,064,340	-		Sama_3434	0.26	-0.1
4,064,340	-		Sama_3434	0.26	-0.9
4,064,388	+		Sama_3434	0.29	-2.0
4,064,388	+		Sama_3434	0.29	-0.7
4,064,389	-		Sama_3434	0.29	-0.7
4,064,389	-		Sama_3434	0.29	+0.1
4,064,389	-		Sama_3434	0.29	+0.7
4,064,412	+		Sama_3434	0.30	-0.7
4,064,412	+		Sama_3434	0.30	-0.7
4,064,413	-		Sama_3434	0.30	-0.9
4,064,413	-		Sama_3434	0.30	+1.1
4,064,413	-		Sama_3434	0.30	-0.1
4,064,413	-		Sama_3434	0.30	+0.6
4,064,413	-		Sama_3434	0.30	-2.1
4,064,413	-		Sama_3434	0.30	-2.0
4,064,416	+		Sama_3434	0.31	-2.4
4,064,416	+		Sama_3434	0.31	-1.5
4,064,416	+		Sama_3434	0.31	-0.4
4,064,416	+		Sama_3434	0.31	-0.7
4,064,416	+		Sama_3434	0.31	-1.1
4,064,416	+		Sama_3434	0.31	-0.3
4,064,416	+		Sama_3434	0.31	-1.1
4,064,417	-		Sama_3434	0.31	-2.3
4,064,417	-		Sama_3434	0.31	+1.3
4,064,417	-		Sama_3434	0.31	-0.9
4,064,417	-		Sama_3434	0.31	-0.6
4,064,417	-		Sama_3434	0.31	-0.3
4,064,417	-		Sama_3434	0.31	-1.3
4,064,417	-		Sama_3434	0.31	+0.0
4,064,417	-		Sama_3434	0.31	-0.7
4,064,421	+		Sama_3434	0.31	-1.0
4,064,421	+		Sama_3434	0.31	-0.3
4,064,421	+		Sama_3434	0.31	+0.1
4,064,422	-		Sama_3434	0.31	-1.1
4,064,422	-		Sama_3434	0.31	-1.5
4,064,422	-		Sama_3434	0.31	-0.4
4,064,468	-		Sama_3434	0.33	-0.2
4,064,549	-		Sama_3434	0.38	-0.3
4,064,549	-		Sama_3434	0.38	-0.6
4,064,549	-		Sama_3434	0.38	-2.3
4,064,549	-		Sama_3434	0.38	-1.6
4,064,549	-		Sama_3434	0.38	+0.0
4,064,549	-		Sama_3434	0.38	-1.8
4,064,549	-		Sama_3434	0.38	-0.2
4,064,620	+		Sama_3434	0.42	-2.3
4,064,621	-		Sama_3434	0.42	+0.3
4,064,687	+		Sama_3434	0.45	-0.8
4,064,687	+		Sama_3434	0.45	-0.5
4,064,688	-		Sama_3434	0.46	-0.5
4,064,688	-		Sama_3434	0.46	-0.6
4,064,734	+		Sama_3434	0.48	-1.6
4,064,734	+		Sama_3434	0.48	-0.3
4,064,735	-		Sama_3434	0.48	-1.3
4,064,988	-		Sama_3434	0.62	+0.6
4,065,006	+		Sama_3434	0.63	+0.2
4,065,006	+		Sama_3434	0.63	-0.0
4,065,007	-		Sama_3434	0.63	-1.5
4,065,079	-		Sama_3434	0.67	+0.3
4,065,159	+		Sama_3434	0.72	-0.5
4,065,159	+		Sama_3434	0.72	-1.3
4,065,159	+		Sama_3434	0.72	-1.1
4,065,160	-		Sama_3434	0.72	-2.0
4,065,160	-		Sama_3434	0.72	-2.7
4,065,160	-		Sama_3434	0.72	-0.7
4,065,160	-		Sama_3434	0.72	-2.1
4,065,160	-		Sama_3434	0.72	-0.4
4,065,166	+		Sama_3434	0.72	-0.6
4,065,167	-		Sama_3434	0.72	-0.9
4,065,201	+		Sama_3434	0.74	-1.3
4,065,201	+		Sama_3434	0.74	-0.7
4,065,201	+		Sama_3434	0.74	-0.9
4,065,201	+		Sama_3434	0.74	-1.7
4,065,202	-		Sama_3434	0.74	-0.3
4,065,264	+		Sama_3434	0.77	-1.3
4,065,337	+		Sama_3434	0.81	-1.1
4,065,338	-		Sama_3434	0.81	-0.1
4,065,338	-		Sama_3434	0.81	-0.0
4,065,414	-		Sama_3434	0.86	+0.4
4,065,534	+				-1.8
4,065,709	+				-0.1
4,065,709	+				-2.0
4,065,709	+				-1.0
4,065,710	-				-1.5
4,065,710	-				+0.3
4,065,710	-				+1.1
4,065,710	-				-1.5
4,065,710	-				-0.7
4,065,711	+				-1.9
4,065,711	+				-1.0
4,065,711	+				-2.0
4,065,711	+				-1.7
4,065,711	+				-2.8
4,065,712	-				-1.7
4,065,712	-				-1.0
4,065,712	-				-0.7
4,065,736	+				-0.0
4,065,736	+				-1.9
4,065,736	+				-0.7
4,065,736	+				+0.4
4,065,737	-				-2.5
4,065,737	-				-1.4
4,065,737	-				-1.0
4,065,737	-				-1.7
4,065,783	+				-1.5
4,065,785	+				+0.1
4,065,785	+				+0.3
4,065,809	+				+0.3
4,065,809	+				+0.1
4,065,809	+				+0.1
4,065,810	-				+0.2
4,065,810	-				-0.7
4,065,810	-				+1.0
4,065,810	-				-1.9
4,065,810	-				+0.8
4,065,815	+				-0.2
4,065,816	-				-0.5
4,065,844	+				-0.9
4,065,844	+				-0.6
4,065,844	+				-1.7
4,065,844	+				+1.6
4,065,844	+				-0.2
4,065,844	+				+1.7
4,065,845	-				-2.6
4,065,864	-				-1.9
4,065,954	+				-1.0
4,065,954	+				-0.1
4,065,955	-				-0.6
4,066,002	+				+0.9
4,066,003	-				-0.4
4,066,013	+				-1.1
4,066,110	+		Sama_3435	0.11	+0.3
4,066,214	+		Sama_3435	0.17	+0.0
4,066,252	-		Sama_3435	0.20	-0.5
4,066,306	+		Sama_3435	0.24	+1.0
4,066,306	+		Sama_3435	0.24	-0.5
4,066,307	-		Sama_3435	0.24	+0.3
4,066,327	-		Sama_3435	0.25	-2.4
4,066,327	-		Sama_3435	0.25	-1.4
4,066,340	+		Sama_3435	0.26	-1.6
4,066,340	+		Sama_3435	0.26	-0.7
4,066,379	+		Sama_3435	0.28	-1.0
4,066,379	+		Sama_3435	0.28	-1.1
4,066,379	+		Sama_3435	0.28	+0.5
4,066,379	+		Sama_3435	0.28	-1.3
4,066,380	-		Sama_3435	0.28	-1.1
4,066,380	-		Sama_3435	0.28	-2.3
4,066,380	-		Sama_3435	0.28	-0.0
4,066,380	-		Sama_3435	0.28	-0.9
4,066,392	+		Sama_3435	0.29	-3.4
4,066,392	+		Sama_3435	0.29	-1.5
4,066,392	+		Sama_3435	0.29	-0.1
4,066,392	+		Sama_3435	0.29	-0.9
4,066,392	+		Sama_3435	0.29	-0.1
4,066,392	+		Sama_3435	0.29	-0.5
4,066,393	-		Sama_3435	0.29	+0.0
4,066,393	-		Sama_3435	0.29	-0.5
4,066,393	-		Sama_3435	0.29	+0.7
4,066,393	-		Sama_3435	0.29	-1.5
4,066,393	-		Sama_3435	0.29	-1.4
4,066,393	-		Sama_3435	0.29	+0.2
4,066,393	-		Sama_3435	0.29	-2.1
4,066,393	-		Sama_3435	0.29	-1.5
4,066,430	+		Sama_3435	0.32	+0.0
4,066,431	-		Sama_3435	0.32	-1.0
4,066,501	+		Sama_3435	0.36	-2.4
4,066,501	+		Sama_3435	0.36	-1.0
4,066,501	+		Sama_3435	0.36	-0.8
4,066,502	-		Sama_3435	0.36	-1.1
4,066,502	-		Sama_3435	0.36	-1.4
4,066,502	-		Sama_3435	0.36	-1.0
4,066,502	-		Sama_3435	0.36	-1.3
4,066,557	-		Sama_3435	0.40	-0.8
4,066,557	-		Sama_3435	0.40	+0.3
4,066,582	+		Sama_3435	0.42	-0.2
4,066,582	+		Sama_3435	0.42	+0.2
4,066,582	+		Sama_3435	0.42	+0.5