Strain Fitness in Shewanella amazonensis SB2B around Sama_2912

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
3,460,893	-		Sama_2910	0.71	-1.5
3,460,922	-		Sama_2910	0.73	+0.6
3,460,974	-		Sama_2910	0.77	-3.2
3,461,278	+				-1.3
3,461,278	+				+0.1
3,461,279	-				+0.5
3,461,279	-				+0.2
3,461,437	-		Sama_2911	0.35	-0.7
3,461,437	-		Sama_2911	0.35	+1.5
3,461,450	-		Sama_2911	0.38	-1.3
3,461,485	+		Sama_2911	0.48	-0.6
3,461,485	+		Sama_2911	0.48	+1.1
3,461,485	+		Sama_2911	0.48	-0.7
3,461,485	+		Sama_2911	0.48	-0.4
3,461,485	+		Sama_2911	0.48	-0.4
3,461,486	-		Sama_2911	0.49	-1.2
3,461,486	-		Sama_2911	0.49	+0.9
3,461,486	-		Sama_2911	0.49	-0.3
3,461,489	+		Sama_2911	0.50	+0.1
3,461,489	+		Sama_2911	0.50	+1.1
3,461,489	+		Sama_2911	0.50	+1.5
3,461,489	+		Sama_2911	0.50	-1.4
3,461,489	+		Sama_2911	0.50	-0.6
3,461,489	+		Sama_2911	0.50	-1.8
3,461,489	+		Sama_2911	0.50	-0.2
3,461,489	+		Sama_2911	0.50	-1.8
3,461,489	+		Sama_2911	0.50	+0.9
3,461,489	+		Sama_2911	0.50	+0.3
3,461,489	+		Sama_2911	0.50	+0.2
3,461,489	+		Sama_2911	0.50	-1.0
3,461,489	+		Sama_2911	0.50	+0.5
3,461,489	+		Sama_2911	0.50	+1.8
3,461,490	-		Sama_2911	0.50	+1.2
3,461,490	-		Sama_2911	0.50	-0.2
3,461,490	-		Sama_2911	0.50	-1.0
3,461,490	-		Sama_2911	0.50	-0.1
3,461,490	-		Sama_2911	0.50	+0.1
3,461,490	-		Sama_2911	0.50	+1.2
3,461,490	-		Sama_2911	0.50	+0.4
3,461,490	-		Sama_2911	0.50	+0.5
3,461,490	-		Sama_2911	0.50	-1.5
3,461,490	-		Sama_2911	0.50	-0.5
3,461,490	-		Sama_2911	0.50	-0.2
3,461,490	-		Sama_2911	0.50	+1.1
3,461,490	-		Sama_2911	0.50	-0.3
3,461,567	-		Sama_2911	0.72	+0.6
3,461,598	+		Sama_2911	0.81	+0.4
3,461,598	+		Sama_2911	0.81	+0.0
3,461,599	-		Sama_2911	0.81	-1.8
3,461,599	-		Sama_2911	0.81	+1.6
3,461,606	-		Sama_2911	0.83	+0.5
3,461,653	+				+0.2
3,461,653	+				+1.1
3,461,654	-				+0.2
3,461,654	-				+0.5
3,461,761	+				-2.5
3,461,761	+				-1.0
3,461,761	+				+1.0
3,461,762	-				-1.8
3,461,798	+				-1.6
3,461,798	+				-1.6
3,461,798	+				+0.0
3,461,798	+				+0.0
3,461,798	+				-0.1
3,461,799	-				-1.0
3,461,799	-				+0.6
3,461,799	-				+0.2
3,461,799	-				+0.6
3,461,799	-				+0.3
3,461,799	-				+0.4
3,461,799	-				+0.4
3,461,799	-				-1.0
3,461,799	-				-1.2
3,461,799	-				-0.1
3,461,799	-				-0.2
3,461,799	-				+0.4
3,461,800	+				-0.4
3,461,800	+				+1.1
3,461,800	+				-1.1
3,461,801	-				-1.1
3,461,862	+				-0.4
3,461,862	+				+0.2
3,461,862	+				+0.2
3,461,863	-				+0.3
3,461,971	-		Sama_2912	0.25	-0.1
3,461,976	+		Sama_2912	0.26	-1.0
3,461,982	+		Sama_2912	0.27	-0.5
3,461,983	-		Sama_2912	0.27	-2.7
3,462,007	+		Sama_2912	0.31	-0.2
3,462,007	+		Sama_2912	0.31	-0.6
3,462,008	-		Sama_2912	0.32	-0.9
3,462,008	-		Sama_2912	0.32	+2.0
3,462,008	-		Sama_2912	0.32	-0.1
3,462,033	+		Sama_2912	0.36	-1.2
3,462,033	+		Sama_2912	0.36	-1.3
3,462,034	-		Sama_2912	0.37	+1.0
3,462,034	-		Sama_2912	0.37	-0.5
3,462,034	-		Sama_2912	0.37	-1.9
3,462,185	+		Sama_2912	0.65	-0.2
3,462,185	+		Sama_2912	0.65	-1.3
3,462,185	+		Sama_2912	0.65	-0.2
3,462,186	-		Sama_2912	0.65	+0.5
3,462,186	-		Sama_2912	0.65	+0.0
3,462,186	-		Sama_2912	0.65	-1.9
3,462,186	-		Sama_2912	0.65	-3.8
3,462,186	-		Sama_2912	0.65	-3.2
3,462,357	+				-0.7
3,462,357	+				+0.1
3,462,358	-				-1.0
3,462,358	-				-1.0
3,462,375	+				+0.7
3,462,375	+				-0.2
3,462,376	-				+0.2
3,462,413	+				-0.4
3,462,413	+				+0.3
3,462,414	-				+0.0
3,462,414	-				+0.6
3,462,424	-				-2.8
3,462,424	-				+0.5
3,462,424	-				+0.2
3,462,424	-				+0.7
3,462,446	+				-0.5
3,462,446	+				+1.7
3,462,446	+				-0.2
3,462,447	-				+1.3
3,462,447	-				+1.1
3,462,460	+				+1.3
3,462,533	+		Sama_2913	0.11	-0.0
3,462,533	+		Sama_2913	0.11	-0.7
3,462,534	-		Sama_2913	0.11	+1.0
3,462,574	+		Sama_2913	0.14	+0.5
3,462,574	+		Sama_2913	0.14	-0.1
3,462,575	-		Sama_2913	0.14	+1.4
3,462,575	-		Sama_2913	0.14	-2.5
3,462,583	+		Sama_2913	0.15	-0.8
3,462,583	+		Sama_2913	0.15	-1.2
3,462,583	+		Sama_2913	0.15	-0.8
3,462,583	+		Sama_2913	0.15	+0.3
3,462,584	-		Sama_2913	0.15	-0.9
3,462,607	-		Sama_2913	0.16	-1.3
3,462,698	-		Sama_2913	0.22	+0.2
3,462,698	-		Sama_2913	0.22	+0.6
3,462,698	-		Sama_2913	0.22	+1.6
3,462,702	+		Sama_2913	0.23	+0.3
3,462,703	-		Sama_2913	0.23	-0.2
3,462,713	+		Sama_2913	0.23	-1.3
3,462,713	+		Sama_2913	0.23	-1.8
3,462,713	+		Sama_2913	0.23	+0.7
3,462,714	-		Sama_2913	0.23	-0.1
3,462,714	-		Sama_2913	0.23	+0.0
3,462,728	+		Sama_2913	0.24	+0.5
3,462,728	+		Sama_2913	0.24	-1.2
3,462,910	+		Sama_2913	0.37	-0.2
3,462,933	+		Sama_2913	0.38	-1.0
3,462,952	-		Sama_2913	0.40	-1.0
3,462,952	-		Sama_2913	0.40	+0.7
3,462,999	+		Sama_2913	0.43	-0.7
3,463,046	+		Sama_2913	0.46	-0.7
3,463,046	+		Sama_2913	0.46	+0.4
3,463,046	+		Sama_2913	0.46	-0.0
3,463,047	-		Sama_2913	0.46	+0.4
3,463,047	-		Sama_2913	0.46	-0.4
3,463,047	-		Sama_2913	0.46	-0.3
3,463,055	+		Sama_2913	0.47	-0.5
3,463,055	+		Sama_2913	0.47	+0.8
3,463,055	+		Sama_2913	0.47	+1.0
3,463,055	+		Sama_2913	0.47	-0.2
3,463,056	-		Sama_2913	0.47	-0.2
3,463,056	-		Sama_2913	0.47	+0.2
3,463,075	+		Sama_2913	0.48	+1.6
3,463,075	+		Sama_2913	0.48	+0.5
3,463,075	+		Sama_2913	0.48	+0.3
3,463,076	-		Sama_2913	0.48	+0.2
3,463,076	-		Sama_2913	0.48	+0.7
3,463,076	-		Sama_2913	0.48	+1.3
3,463,077	+		Sama_2913	0.48	-1.2
3,463,077	+		Sama_2913	0.48	+0.8
3,463,078	-		Sama_2913	0.48	-1.5
3,463,078	-		Sama_2913	0.48	+0.1
3,463,078	-		Sama_2913	0.48	-0.9
3,463,078	-		Sama_2913	0.48	-1.2
3,463,120	+		Sama_2913	0.51	+0.6
3,463,120	+		Sama_2913	0.51	-1.3
3,463,120	+		Sama_2913	0.51	-0.2
3,463,120	+		Sama_2913	0.51	+0.0
3,463,121	-		Sama_2913	0.51	-0.9
3,463,121	-		Sama_2913	0.51	-1.4
3,463,121	-		Sama_2913	0.51	+0.3
3,463,121	-		Sama_2913	0.51	-1.2
3,463,123	+		Sama_2913	0.51	-1.1
3,463,124	-		Sama_2913	0.51	-1.3
3,463,124	-		Sama_2913	0.51	+0.6
3,463,137	-		Sama_2913	0.52	-1.4
3,463,178	+		Sama_2913	0.55	-0.3
3,463,178	+		Sama_2913	0.55	+1.0
3,463,179	-		Sama_2913	0.55	+2.2
3,463,179	-		Sama_2913	0.55	-1.0
3,463,179	-		Sama_2913	0.55	-3.2
3,463,179	-		Sama_2913	0.55	+2.0