Strain Fitness in Shewanella amazonensis SB2B around Sama_2541

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
3,050,301	+		Sama_2540	0.52	+0.3
3,050,301	+		Sama_2540	0.52	-0.3
3,050,302	-		Sama_2540	0.52	+0.3
3,050,302	-		Sama_2540	0.52	+0.9
3,050,302	-		Sama_2540	0.52	-1.5
3,050,302	-		Sama_2540	0.52	-0.8
3,050,302	-		Sama_2540	0.52	-0.2
3,050,305	+		Sama_2540	0.52	+0.9
3,050,305	+		Sama_2540	0.52	+1.5
3,050,305	+		Sama_2540	0.52	+1.2
3,050,305	+		Sama_2540	0.52	+1.3
3,050,306	-		Sama_2540	0.52	+0.4
3,050,306	-		Sama_2540	0.52	-0.2
3,050,420	+		Sama_2540	0.58	+0.3
3,050,421	-		Sama_2540	0.58	+0.6
3,050,421	-		Sama_2540	0.58	+1.2
3,050,538	+		Sama_2540	0.65	+0.9
3,050,617	+		Sama_2540	0.69	-0.1
3,050,617	+		Sama_2540	0.69	+1.5
3,050,684	-		Sama_2540	0.73	+0.5
3,050,761	-		Sama_2540	0.77	+1.5
3,050,764	+		Sama_2540	0.77	+0.0
3,050,764	+		Sama_2540	0.77	+0.5
3,050,765	-		Sama_2540	0.77	+1.1
3,050,765	-		Sama_2540	0.77	-2.6
3,050,793	+		Sama_2540	0.79	-0.7
3,050,793	+		Sama_2540	0.79	+0.6
3,050,794	-		Sama_2540	0.79	+2.3
3,050,821	+		Sama_2540	0.81	-1.0
3,050,822	-		Sama_2540	0.81	-1.4
3,050,822	-		Sama_2540	0.81	-0.1
3,050,910	+		Sama_2540	0.85	+0.3
3,050,910	+		Sama_2540	0.85	+0.2
3,050,910	+		Sama_2540	0.85	-0.3
3,050,911	-		Sama_2540	0.85	-1.4
3,051,028	-				+1.1
3,051,049	+				+1.2
3,051,070	+				+0.9
3,051,070	+				-1.1
3,051,097	+				+1.0
3,051,097	+				+0.1
3,051,097	+				+0.9
3,051,097	+				+1.5
3,051,098	-				-1.1
3,051,098	-				+0.2
3,051,121	+				+1.7
3,051,121	+				-0.7
3,051,121	+				-0.4
3,051,121	+				-0.8
3,051,122	-				-2.6
3,051,122	-				-0.8
3,051,127	+				-0.1
3,051,127	+				-2.3
3,051,127	+				+0.4
3,051,127	+				+1.9
3,051,127	+				+0.3
3,051,128	-				+0.8
3,051,140	+				-0.8
3,051,141	-				-1.6
3,051,149	+				-0.5
3,051,149	+				+0.6
3,051,150	-				+1.2
3,051,150	-				+1.2
3,051,150	-				-0.4
3,051,207	-				-2.1
3,051,238	+				-0.1
3,051,239	-				+0.4
3,051,277	+				-0.1
3,051,278	-				+1.3
3,051,322	+				-2.3
3,051,408	+		Sama_2541	0.23	+0.4
3,051,408	+		Sama_2541	0.23	-0.9
3,051,408	+		Sama_2541	0.23	-2.0
3,051,408	+		Sama_2541	0.23	-3.1
3,051,467	+		Sama_2541	0.35	-0.1
3,051,467	+		Sama_2541	0.35	+0.4
3,051,467	+		Sama_2541	0.35	+0.7
3,051,467	+		Sama_2541	0.35	+1.2
3,051,468	-		Sama_2541	0.35	-0.3
3,051,468	-		Sama_2541	0.35	+0.2
3,051,468	-		Sama_2541	0.35	-0.5
3,051,468	-		Sama_2541	0.35	-0.3
3,051,468	-		Sama_2541	0.35	-1.4
3,051,535	+		Sama_2541	0.48	+0.5
3,051,536	-		Sama_2541	0.48	-0.1
3,051,537	+		Sama_2541	0.48	-0.6
3,051,537	+		Sama_2541	0.48	-0.6
3,051,537	+		Sama_2541	0.48	-1.4
3,051,537	+		Sama_2541	0.48	+0.1
3,051,537	+		Sama_2541	0.48	-1.9
3,051,537	+		Sama_2541	0.48	-1.4
3,051,537	+		Sama_2541	0.48	-0.5
3,051,538	-		Sama_2541	0.49	-1.9
3,051,538	-		Sama_2541	0.49	+0.7
3,051,538	-		Sama_2541	0.49	-0.3
3,051,538	-		Sama_2541	0.49	-2.1
3,051,538	-		Sama_2541	0.49	-0.3
3,051,538	-		Sama_2541	0.49	-0.3
3,051,538	-		Sama_2541	0.49	+1.5
3,051,538	-		Sama_2541	0.49	-0.9
3,051,538	-		Sama_2541	0.49	+0.3
3,051,568	+		Sama_2541	0.55	-1.5
3,051,568	+		Sama_2541	0.55	-1.3
3,051,568	+		Sama_2541	0.55	-1.6
3,051,569	-		Sama_2541	0.55	-1.4
3,051,571	-		Sama_2541	0.55	-1.3
3,051,575	-		Sama_2541	0.56	-0.7
3,051,610	+		Sama_2541	0.63	+0.8
3,051,610	+		Sama_2541	0.63	-1.9
3,051,610	+		Sama_2541	0.63	-1.0
3,051,611	-		Sama_2541	0.63	+0.5
3,051,700	+		Sama_2541	0.80	-1.6
3,051,778	+				-0.1
3,051,791	+				-0.1
3,051,791	+				-0.3
3,051,858	+				-0.2
3,051,858	+				+2.7
3,051,858	+				+1.3
3,051,859	-				+1.6
3,051,859	-				+0.6
3,051,859	-				-3.0
3,051,859	-				-0.3
3,051,859	-				-0.1
3,051,859	-				-1.1
3,051,894	-				-0.7
3,051,903	+				+0.1
3,051,904	-				+0.1
3,051,927	+				+1.7
3,051,927	+				+0.1
3,051,927	+				+0.1
3,051,928	-				-0.4
3,051,928	-				+1.7
3,051,928	-				+0.1
3,051,928	-				+0.2
3,051,928	-				+0.9
3,051,928	-				+0.3
3,051,949	-				-0.0
3,051,949	-				+0.4
3,052,068	-		Sama_2542	0.17	-1.4
3,052,085	+		Sama_2542	0.18	+0.3
3,052,086	-		Sama_2542	0.18	-1.1
3,052,086	-		Sama_2542	0.18	-0.1
3,052,122	+		Sama_2542	0.22	+0.3
3,052,123	-		Sama_2542	0.22	-0.6
3,052,135	+		Sama_2542	0.23	-1.4
3,052,135	+		Sama_2542	0.23	-1.7
3,052,136	-		Sama_2542	0.23	+0.0
3,052,160	+		Sama_2542	0.25	+0.8
3,052,161	-		Sama_2542	0.25	-0.3
3,052,178	+		Sama_2542	0.27	+1.1
3,052,179	-		Sama_2542	0.27	+3.2
3,052,179	-		Sama_2542	0.27	+1.1
3,052,213	+		Sama_2542	0.30	+0.3
3,052,235	-		Sama_2542	0.32	+0.9
3,052,260	+		Sama_2542	0.34	-0.6
3,052,260	+		Sama_2542	0.34	-1.6
3,052,260	+		Sama_2542	0.34	+1.5
3,052,261	-		Sama_2542	0.35	+0.4
3,052,261	-		Sama_2542	0.35	-1.2
3,052,261	-		Sama_2542	0.35	+0.6
3,052,261	-		Sama_2542	0.35	-0.4
3,052,261	-		Sama_2542	0.35	+0.5
3,052,261	-		Sama_2542	0.35	+0.6
3,052,261	-		Sama_2542	0.35	-0.3
3,052,261	-		Sama_2542	0.35	+1.6
3,052,261	-		Sama_2542	0.35	+1.7
3,052,261	-		Sama_2542	0.35	-0.1
3,052,263	+		Sama_2542	0.35	+0.1
3,052,263	+		Sama_2542	0.35	-0.1
3,052,264	-		Sama_2542	0.35	+1.7
3,052,264	-		Sama_2542	0.35	+0.2
3,052,264	-		Sama_2542	0.35	+0.9
3,052,264	-		Sama_2542	0.35	+0.5
3,052,264	-		Sama_2542	0.35	-1.0
3,052,266	+		Sama_2542	0.35	-0.8
3,052,266	+		Sama_2542	0.35	+0.5
3,052,266	+		Sama_2542	0.35	-0.8
3,052,266	+		Sama_2542	0.35	+0.6
3,052,266	+		Sama_2542	0.35	+1.2
3,052,266	+		Sama_2542	0.35	-1.0
3,052,266	+		Sama_2542	0.35	+1.6
3,052,266	+		Sama_2542	0.35	-0.8
3,052,266	+		Sama_2542	0.35	+0.2
3,052,267	-		Sama_2542	0.35	-0.6
3,052,267	-		Sama_2542	0.35	+1.0
3,052,267	-		Sama_2542	0.35	-0.2
3,052,267	-		Sama_2542	0.35	-0.1
3,052,279	+		Sama_2542	0.36	-0.1
3,052,279	+		Sama_2542	0.36	-0.3
3,052,280	-		Sama_2542	0.36	+0.1
3,052,280	-		Sama_2542	0.36	-0.3
3,052,280	-		Sama_2542	0.36	+0.5
3,052,280	-		Sama_2542	0.36	+0.2
3,052,296	-		Sama_2542	0.38	+1.2
3,052,305	+		Sama_2542	0.39	+0.7
3,052,305	+		Sama_2542	0.39	-1.1
3,052,306	-		Sama_2542	0.39	+1.3
3,052,306	-		Sama_2542	0.39	-0.8
3,052,306	-		Sama_2542	0.39	+1.5
3,052,354	+		Sama_2542	0.43	+0.7
3,052,355	-		Sama_2542	0.43	+0.6
3,052,356	+		Sama_2542	0.43	+0.2
3,052,356	+		Sama_2542	0.43	+0.9
3,052,356	+		Sama_2542	0.43	+2.2
3,052,357	-		Sama_2542	0.43	-0.9
3,052,357	-		Sama_2542	0.43	+0.6
3,052,357	-		Sama_2542	0.43	+0.5
3,052,438	+		Sama_2542	0.51	+0.1
3,052,447	+		Sama_2542	0.52	+0.9
3,052,448	-		Sama_2542	0.52	+0.9
3,052,460	-		Sama_2542	0.53	-1.9
3,052,474	+		Sama_2542	0.54	+4.2
3,052,475	-		Sama_2542	0.54	-1.7
3,052,477	+		Sama_2542	0.54	-0.1
3,052,478	-		Sama_2542	0.54	-1.2
3,052,478	-		Sama_2542	0.54	-1.9
3,052,542	+		Sama_2542	0.60	+1.1
3,052,542	+		Sama_2542	0.60	+0.3
3,052,542	+		Sama_2542	0.60	+1.5
3,052,542	+		Sama_2542	0.60	+0.7
3,052,543	-		Sama_2542	0.60	-0.7
3,052,543	-		Sama_2542	0.60	-0.1
3,052,543	-		Sama_2542	0.60	+1.5
3,052,543	-		Sama_2542	0.60	+1.9
3,052,543	-		Sama_2542	0.60	+0.9
3,052,543	-		Sama_2542	0.60	-0.1
3,052,575	+		Sama_2542	0.63	-0.9
3,052,619	+		Sama_2542	0.67	-1.1
3,052,619	+		Sama_2542	0.67	+0.4
3,052,662	+		Sama_2542	0.71	-0.5
3,052,665	+		Sama_2542	0.72	+1.9
3,052,666	-		Sama_2542	0.72	+1.4
3,052,666	-		Sama_2542	0.72	+1.1
3,052,666	-		Sama_2542	0.72	-0.6
3,052,749	+		Sama_2542	0.79	-1.1
3,052,749	+		Sama_2542	0.79	-0.7