Strain Fitness in Shewanella amazonensis SB2B around Sama_2209

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
2,669,387	-				+1.1
2,669,387	-				+0.5
2,669,430	-				+0.6
2,669,436	-				+0.4
2,669,476	+				-0.2
2,669,486	+				+0.1
2,669,486	+				-1.1
2,669,487	-				-0.7
2,669,487	-				-1.3
2,669,487	-				+0.6
2,669,520	+				-0.3
2,669,520	+				-1.0
2,669,521	-				+0.2
2,669,521	-				+1.2
2,669,525	+				+1.5
2,669,525	+				-1.1
2,669,525	+				+1.4
2,669,525	+				+0.4
2,669,526	-				+0.9
2,669,540	+				+1.0
2,669,552	+				+1.1
2,669,603	+		Sama_2208	0.20	+0.1
2,669,604	-		Sama_2208	0.20	-0.7
2,669,636	-		Sama_2208	0.34	-0.7
2,669,636	-		Sama_2208	0.34	+1.4
2,669,699	-		Sama_2208	0.62	-1.4
2,669,699	-		Sama_2208	0.62	-1.4
2,669,783	+				-0.1
2,669,964	+				+1.7
2,669,982	+				+1.1
2,670,025	+				+1.3
2,670,026	-				-2.3
2,670,033	-				-1.3
2,670,033	-				-2.3
2,670,097	+				-3.5
2,670,098	-				-2.8
2,670,098	-				-3.4
2,670,185	-		Sama_2209	0.13	-3.4
2,670,258	+		Sama_2209	0.20	-3.5
2,670,258	+		Sama_2209	0.20	-2.3
2,670,258	+		Sama_2209	0.20	-3.2
2,670,258	+		Sama_2209	0.20	-4.4
2,670,259	-		Sama_2209	0.20	-1.3
2,670,259	-		Sama_2209	0.20	-1.8
2,670,259	-		Sama_2209	0.20	-3.1
2,670,260	+		Sama_2209	0.20	-4.7
2,670,260	+		Sama_2209	0.20	-2.6
2,670,260	+		Sama_2209	0.20	-1.3
2,670,261	-		Sama_2209	0.20	-2.6
2,670,261	-		Sama_2209	0.20	-3.0
2,670,261	-		Sama_2209	0.20	-0.9
2,670,261	-		Sama_2209	0.20	-0.0
2,670,261	-		Sama_2209	0.20	-2.4
2,670,271	+		Sama_2209	0.21	-4.4
2,670,272	-		Sama_2209	0.21	-2.1
2,670,272	-		Sama_2209	0.21	-1.9
2,670,334	+		Sama_2209	0.27	-0.8
2,670,334	+		Sama_2209	0.27	-1.3
2,670,334	+		Sama_2209	0.27	-2.4
2,670,334	+		Sama_2209	0.27	-3.5
2,670,335	-		Sama_2209	0.28	-3.4
2,670,335	-		Sama_2209	0.28	-2.1
2,670,476	+		Sama_2209	0.41	-3.8
2,670,476	+		Sama_2209	0.41	-3.2
2,670,476	+		Sama_2209	0.41	-3.1
2,670,476	+		Sama_2209	0.41	-2.8
2,670,476	+		Sama_2209	0.41	-0.8
2,670,477	-		Sama_2209	0.41	-3.0
2,670,477	-		Sama_2209	0.41	-2.4
2,670,507	+		Sama_2209	0.44	-3.2
2,670,719	+		Sama_2209	0.65	-2.8
2,670,719	+		Sama_2209	0.65	-2.8
2,670,723	+		Sama_2209	0.66	-2.4
2,670,723	+		Sama_2209	0.66	-2.7
2,670,723	+		Sama_2209	0.66	-3.6
2,670,724	-		Sama_2209	0.66	-1.3
2,670,724	-		Sama_2209	0.66	-2.1
2,670,724	-		Sama_2209	0.66	-2.7
2,670,724	-		Sama_2209	0.66	-2.4
2,670,724	-		Sama_2209	0.66	-3.6
2,670,724	-		Sama_2209	0.66	-1.6
2,670,724	-		Sama_2209	0.66	-3.7
2,670,738	+		Sama_2209	0.67	-2.4
2,670,739	-		Sama_2209	0.67	-0.8
2,670,745	+		Sama_2209	0.68	-3.7
2,670,745	+		Sama_2209	0.68	-1.8
2,670,745	+		Sama_2209	0.68	-3.4
2,670,746	-		Sama_2209	0.68	-2.3
2,670,746	-		Sama_2209	0.68	-0.3
2,670,746	-		Sama_2209	0.68	-2.1
2,670,786	+		Sama_2209	0.72	-0.8
2,670,786	+		Sama_2209	0.72	-1.8
2,670,787	-		Sama_2209	0.72	-1.6
2,670,787	-		Sama_2209	0.72	-2.6
2,670,787	-		Sama_2209	0.72	-3.6
2,670,788	+		Sama_2209	0.72	-2.7
2,670,788	+		Sama_2209	0.72	-3.1
2,670,788	+		Sama_2209	0.72	-3.6
2,670,788	+		Sama_2209	0.72	-2.6
2,670,788	+		Sama_2209	0.72	-3.5
2,670,788	+		Sama_2209	0.72	-3.0
2,670,788	+		Sama_2209	0.72	-2.4
2,670,788	+		Sama_2209	0.72	-3.1
2,670,788	+		Sama_2209	0.72	-2.3
2,670,788	+		Sama_2209	0.72	-1.8
2,670,788	+		Sama_2209	0.72	-2.1
2,670,788	+		Sama_2209	0.72	-2.1
2,670,788	+		Sama_2209	0.72	-2.1
2,670,788	+		Sama_2209	0.72	-2.7
2,670,788	+		Sama_2209	0.72	-0.8
2,670,788	+		Sama_2209	0.72	-3.0
2,670,788	+		Sama_2209	0.72	-3.0
2,670,788	+		Sama_2209	0.72	-1.6
2,670,789	-		Sama_2209	0.72	-1.8
2,670,789	-		Sama_2209	0.72	-2.4
2,670,789	-		Sama_2209	0.72	-3.1
2,670,789	-		Sama_2209	0.72	-1.6
2,670,789	-		Sama_2209	0.72	-2.1
2,670,789	-		Sama_2209	0.72	-1.3
2,670,987	-				-2.6
2,671,032	-				-0.8
2,671,108	+				-1.3
2,671,108	+				-2.3
2,671,108	+				+1.0
2,671,152	-				-2.8
2,671,207	+				-2.3
2,671,207	+				-0.8
2,671,211	+				-3.9
2,671,212	-				-1.4
2,671,220	+				-1.3
2,671,221	-				-1.3
2,671,221	-				-3.4
2,671,221	-				-2.7
2,671,243	+		Sama_2210	0.11	-1.3
2,671,243	+		Sama_2210	0.11	-0.4
2,671,274	+		Sama_2210	0.16	-3.1
2,671,274	+		Sama_2210	0.16	-1.8
2,671,275	-		Sama_2210	0.16	-2.3
2,671,275	-		Sama_2210	0.16	-2.7
2,671,347	+		Sama_2210	0.28	-2.3
2,671,442	+		Sama_2210	0.42	-3.8
2,671,455	+		Sama_2210	0.44	-3.0
2,671,455	+		Sama_2210	0.44	-1.6
2,671,488	+		Sama_2210	0.50	-1.5
2,671,488	+		Sama_2210	0.50	-1.3
2,671,488	+		Sama_2210	0.50	-0.3
2,671,489	-		Sama_2210	0.50	-1.8
2,671,503	+		Sama_2210	0.52	-1.3
2,671,537	+		Sama_2210	0.57	-2.5
2,671,538	-		Sama_2210	0.57	-1.6
2,671,550	-		Sama_2210	0.59	-2.7
2,671,748	+				-3.4
2,671,748	+				-0.6
2,671,748	+				+0.1
2,671,749	-				-1.8
2,671,749	-				-2.3
2,671,749	-				-1.3
2,671,749	-				-2.3
2,671,787	+				-0.0
2,671,787	+				+0.7
2,671,902	+				-3.7
2,671,902	+				-0.3
2,671,903	-				-4.0
2,671,903	-				-3.4
2,671,903	-				-0.8
2,671,970	+		Sama_2211	0.12	-4.0
2,671,971	-		Sama_2211	0.12	-3.2
2,671,971	-		Sama_2211	0.12	-2.6
2,671,971	-		Sama_2211	0.12	-1.8
2,671,971	-		Sama_2211	0.12	-4.7
2,671,971	-		Sama_2211	0.12	-3.4
2,671,997	-		Sama_2211	0.13	-1.8
2,671,997	-		Sama_2211	0.13	-2.4