Strain Fitness in Shewanella amazonensis SB2B around Sama_2094

Experiment: a-Ketoglutaric

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_2092 and Sama_2093 are separated by 83 nucleotidesSama_2093 and Sama_2094 are separated by 124 nucleotidesSama_2094 and Sama_2095 are separated by 303 nucleotides Sama_2092: Sama_2092 - OmpA/MotB (RefSeq), at 2,536,350 to 2,537,219 _2092 Sama_2093: Sama_2093 - ribonuclease T (RefSeq), at 2,537,303 to 2,538,079 _2093 Sama_2094: Sama_2094 - alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen (RefSeq), at 2,538,204 to 2,538,809 _2094 Sama_2095: Sama_2095 - hypothetical protein (RefSeq), at 2,539,113 to 2,540,435 _2095 Position (kb) 2538 2539Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2537.211 kb on - strandat 2537.220 kb on - strandat 2537.220 kb on - strandat 2537.220 kb on - strandat 2537.220 kb on - strandat 2537.243 kb on + strandat 2537.244 kb on - strandat 2537.254 kb on + strandat 2537.255 kb on - strandat 2537.255 kb on - strandat 2537.265 kb on - strandat 2537.265 kb on - strandat 2537.324 kb on - strandat 2537.324 kb on - strandat 2537.328 kb on + strandat 2537.328 kb on + strandat 2537.328 kb on + strandat 2537.328 kb on + strandat 2537.331 kb on + strandat 2537.611 kb on + strand, within Sama_2093at 2537.712 kb on + strand, within Sama_2093at 2537.948 kb on + strand, within Sama_2093at 2538.022 kb on + strandat 2538.064 kb on + strandat 2538.105 kb on + strandat 2538.106 kb on - strandat 2538.130 kb on + strandat 2538.385 kb on - strand, within Sama_2094at 2538.401 kb on + strand, within Sama_2094at 2538.402 kb on - strand, within Sama_2094at 2538.402 kb on - strand, within Sama_2094at 2538.402 kb on - strand, within Sama_2094at 2538.402 kb on - strand, within Sama_2094at 2538.460 kb on - strand, within Sama_2094at 2538.460 kb on - strand, within Sama_2094at 2538.460 kb on - strand, within Sama_2094at 2538.460 kb on - strand, within Sama_2094at 2538.460 kb on - strand, within Sama_2094at 2538.460 kb on - strand, within Sama_2094at 2538.489 kb on - strand, within Sama_2094at 2538.509 kb on - strand, within Sama_2094at 2538.513 kb on - strand, within Sama_2094at 2538.513 kb on - strand, within Sama_2094at 2538.513 kb on - strand, within Sama_2094at 2538.513 kb on - strand, within Sama_2094at 2538.513 kb on - strand, within Sama_2094at 2538.538 kb on - strand, within Sama_2094at 2538.549 kb on - strand, within Sama_2094at 2538.549 kb on - strand, within Sama_2094at 2538.788 kb on + strandat 2538.789 kb on - strandat 2538.795 kb on + strandat 2538.796 kb on - strandat 2538.796 kb on - strandat 2538.798 kb on + strandat 2538.798 kb on + strandat 2538.798 kb on + strandat 2538.798 kb on + strandat 2538.799 kb on - strandat 2538.799 kb on - strandat 2538.799 kb on - strandat 2538.799 kb on - strandat 2538.801 kb on + strandat 2538.802 kb on - strandat 2538.802 kb on - strandat 2538.802 kb on - strandat 2538.802 kb on - strandat 2538.824 kb on + strandat 2538.824 kb on + strandat 2538.837 kb on - strandat 2538.837 kb on - strandat 2538.842 kb on + strandat 2538.845 kb on + strandat 2538.845 kb on + strandat 2538.845 kb on + strandat 2538.846 kb on - strandat 2538.846 kb on - strandat 2538.861 kb on - strandat 2538.864 kb on + strandat 2538.864 kb on + strandat 2538.865 kb on - strandat 2538.865 kb on - strandat 2538.874 kb on + strandat 2538.874 kb on + strandat 2538.874 kb on + strandat 2538.875 kb on - strandat 2538.875 kb on - strandat 2538.876 kb on + strandat 2538.876 kb on + strandat 2538.876 kb on + strandat 2538.876 kb on + strandat 2538.877 kb on - strandat 2538.877 kb on - strandat 2538.877 kb on - strandat 2538.877 kb on - strandat 2538.915 kb on + strandat 2539.083 kb on + strandat 2539.108 kb on + strandat 2539.108 kb on + strandat 2539.108 kb on + strandat 2539.109 kb on - strandat 2539.109 kb on - strandat 2539.109 kb on - strandat 2539.109 kb on - strandat 2539.156 kb on + strandat 2539.182 kb on - strandat 2539.182 kb on - strandat 2539.227 kb on - strandat 2539.256 kb on + strand, within Sama_2095at 2539.285 kb on + strand, within Sama_2095at 2539.285 kb on + strand, within Sama_2095at 2539.285 kb on + strand, within Sama_2095at 2539.286 kb on - strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.296 kb on + strand, within Sama_2095at 2539.297 kb on - strand, within Sama_2095at 2539.297 kb on - strand, within Sama_2095at 2539.297 kb on - strand, within Sama_2095at 2539.297 kb on - strand, within Sama_2095at 2539.409 kb on + strand, within Sama_2095at 2539.418 kb on + strand, within Sama_2095at 2539.418 kb on + strand, within Sama_2095at 2539.418 kb on + strand, within Sama_2095at 2539.419 kb on - strand, within Sama_2095at 2539.419 kb on - strand, within Sama_2095at 2539.419 kb on - strand, within Sama_2095at 2539.475 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.590 kb on + strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.591 kb on - strand, within Sama_2095at 2539.592 kb on + strand, within Sama_2095at 2539.635 kb on - strand, within Sama_2095at 2539.704 kb on - strand, within Sama_2095at 2539.737 kb on - strand, within Sama_2095at 2539.760 kb on + strand, within Sama_2095at 2539.761 kb on - strand, within Sama_2095at 2539.773 kb on + strand, within Sama_2095at 2539.773 kb on + strand, within Sama_2095at 2539.774 kb on - strand, within Sama_2095at 2539.774 kb on - strand, within Sama_2095at 2539.774 kb on - strand, within Sama_2095

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric
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2,537,211 - -0.0
2,537,220 - -3.5
2,537,220 - -0.2
2,537,220 - -1.7
2,537,220 - -0.8
2,537,243 + -0.7
2,537,244 - -0.8
2,537,254 + -0.4
2,537,255 - -1.9
2,537,255 - +0.2
2,537,265 - -0.3
2,537,265 - +0.1
2,537,324 - +1.4
2,537,324 - +0.6
2,537,328 + +0.5
2,537,328 + -0.4
2,537,328 + -0.9
2,537,328 + +0.6
2,537,331 + -0.6
2,537,611 + Sama_2093 0.40 +2.3
2,537,712 + Sama_2093 0.53 +1.0
2,537,948 + Sama_2093 0.83 -1.4
2,538,022 + +0.6
2,538,064 + -0.5
2,538,105 + +0.1
2,538,106 - +0.1
2,538,130 + -0.4
2,538,385 - Sama_2094 0.30 -0.0
2,538,401 + Sama_2094 0.33 -0.9
2,538,402 - Sama_2094 0.33 +1.6
2,538,402 - Sama_2094 0.33 -0.3
2,538,402 - Sama_2094 0.33 -1.2
2,538,402 - Sama_2094 0.33 -2.3
2,538,460 - Sama_2094 0.42 -0.7
2,538,460 - Sama_2094 0.42 -1.5
2,538,460 - Sama_2094 0.42 +0.1
2,538,460 - Sama_2094 0.42 -0.9
2,538,460 - Sama_2094 0.42 -1.8
2,538,460 - Sama_2094 0.42 -2.9
2,538,489 - Sama_2094 0.47 -2.4
2,538,509 - Sama_2094 0.50 -0.6
2,538,513 - Sama_2094 0.51 -0.1
2,538,513 - Sama_2094 0.51 -1.4
2,538,513 - Sama_2094 0.51 -2.4
2,538,513 - Sama_2094 0.51 -2.2
2,538,513 - Sama_2094 0.51 -2.2
2,538,538 - Sama_2094 0.55 -3.3
2,538,549 - Sama_2094 0.57 -0.5
2,538,549 - Sama_2094 0.57 -1.7
2,538,788 + -0.5
2,538,789 - -2.5
2,538,795 + +0.5
2,538,796 - -2.0
2,538,796 - -0.9
2,538,798 + -2.5
2,538,798 + -3.3
2,538,798 + -1.7
2,538,798 + -2.3
2,538,799 - -2.9
2,538,799 - -2.8
2,538,799 - -0.8
2,538,799 - -1.7
2,538,801 + +0.6
2,538,802 - -2.2
2,538,802 - -0.7
2,538,802 - -0.9
2,538,802 - -0.9
2,538,824 + -0.9
2,538,824 + -0.9
2,538,837 - -0.5
2,538,837 - -0.8
2,538,842 + -0.5
2,538,845 + -1.4
2,538,845 + -1.7
2,538,845 + -2.2
2,538,846 - +0.6
2,538,846 - +0.6
2,538,861 - +0.6
2,538,864 + -2.1
2,538,864 + -2.2
2,538,865 - -2.2
2,538,865 - -2.6
2,538,874 + -3.8
2,538,874 + +1.6
2,538,874 + -3.2
2,538,875 - -2.0
2,538,875 - -3.1
2,538,876 + -1.7
2,538,876 + -0.9
2,538,876 + -1.1
2,538,876 + -3.8
2,538,877 - -2.4
2,538,877 - +2.0
2,538,877 - -1.3
2,538,877 - +0.6
2,538,915 + -0.2
2,539,083 + +1.5
2,539,108 + +0.2
2,539,108 + +0.3
2,539,108 + +0.6
2,539,109 - -1.8
2,539,109 - -0.2
2,539,109 - +1.6
2,539,109 - -1.9
2,539,156 + +0.6
2,539,182 - +1.6
2,539,182 - +0.6
2,539,227 - +0.6
2,539,256 + Sama_2095 0.11 +0.5
2,539,285 + Sama_2095 0.13 -0.1
2,539,285 + Sama_2095 0.13 +0.0
2,539,285 + Sama_2095 0.13 +0.8
2,539,286 - Sama_2095 0.13 +0.7
2,539,296 + Sama_2095 0.14 -0.4
2,539,296 + Sama_2095 0.14 -1.0
2,539,296 + Sama_2095 0.14 -0.1
2,539,296 + Sama_2095 0.14 +1.0
2,539,296 + Sama_2095 0.14 -0.7
2,539,296 + Sama_2095 0.14 -1.7
2,539,296 + Sama_2095 0.14 -0.4
2,539,296 + Sama_2095 0.14 -1.7
2,539,296 + Sama_2095 0.14 +1.6
2,539,296 + Sama_2095 0.14 +1.0
2,539,296 + Sama_2095 0.14 -0.2
2,539,297 - Sama_2095 0.14 -0.4
2,539,297 - Sama_2095 0.14 -0.4
2,539,297 - Sama_2095 0.14 +2.2
2,539,297 - Sama_2095 0.14 -1.7
2,539,409 + Sama_2095 0.22 -0.4
2,539,418 + Sama_2095 0.23 -2.4
2,539,418 + Sama_2095 0.23 +0.8
2,539,418 + Sama_2095 0.23 +0.5
2,539,419 - Sama_2095 0.23 -0.4
2,539,419 - Sama_2095 0.23 +2.1
2,539,419 - Sama_2095 0.23 +2.0
2,539,475 + Sama_2095 0.27 -0.5
2,539,590 + Sama_2095 0.36 +0.8
2,539,590 + Sama_2095 0.36 +0.5
2,539,590 + Sama_2095 0.36 -2.4
2,539,590 + Sama_2095 0.36 -0.7
2,539,590 + Sama_2095 0.36 -3.1
2,539,590 + Sama_2095 0.36 -0.2
2,539,590 + Sama_2095 0.36 -0.5
2,539,590 + Sama_2095 0.36 +1.1
2,539,590 + Sama_2095 0.36 -0.2
2,539,590 + Sama_2095 0.36 -2.2
2,539,590 + Sama_2095 0.36 -1.7
2,539,590 + Sama_2095 0.36 -1.4
2,539,590 + Sama_2095 0.36 -0.8
2,539,591 - Sama_2095 0.36 +0.3
2,539,591 - Sama_2095 0.36 -0.4
2,539,591 - Sama_2095 0.36 -1.5
2,539,591 - Sama_2095 0.36 -0.8
2,539,591 - Sama_2095 0.36 +0.2
2,539,591 - Sama_2095 0.36 +0.3
2,539,591 - Sama_2095 0.36 +0.6
2,539,591 - Sama_2095 0.36 +0.2
2,539,591 - Sama_2095 0.36 +0.8
2,539,591 - Sama_2095 0.36 -1.2
2,539,591 - Sama_2095 0.36 -1.0
2,539,591 - Sama_2095 0.36 -1.4
2,539,591 - Sama_2095 0.36 +0.8
2,539,592 + Sama_2095 0.36 -0.5
2,539,635 - Sama_2095 0.39 -1.7
2,539,704 - Sama_2095 0.45 +0.9
2,539,737 - Sama_2095 0.47 -2.2
2,539,760 + Sama_2095 0.49 +0.8
2,539,761 - Sama_2095 0.49 -1.7
2,539,773 + Sama_2095 0.50 +1.3
2,539,773 + Sama_2095 0.50 -2.2
2,539,774 - Sama_2095 0.50 +0.8
2,539,774 - Sama_2095 0.50 +0.6
2,539,774 - Sama_2095 0.50 +0.6

Or see this region's nucleotide sequence