Strain Fitness in Shewanella amazonensis SB2B around Sama_1963

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
2,390,362	+				-1.5
2,390,381	+				-1.6
2,390,382	-				-1.6
2,390,382	-				-1.9
2,390,382	-				-3.7
2,390,382	-				-2.0
2,390,382	-				-1.0
2,390,382	-				-0.7
2,390,382	-				-2.0
2,390,382	-				-1.5
2,390,496	-		Sama_1962	0.19	-1.0
2,390,563	+		Sama_1962	0.26	-1.0
2,390,564	-		Sama_1962	0.26	-1.5
2,390,564	-		Sama_1962	0.26	-3.5
2,390,564	-		Sama_1962	0.26	-0.1
2,390,564	-		Sama_1962	0.26	-1.3
2,390,564	-		Sama_1962	0.26	-2.9
2,390,585	+		Sama_1962	0.29	-3.3
2,390,586	-		Sama_1962	0.29	-0.5
2,390,586	-		Sama_1962	0.29	-1.0
2,390,586	-		Sama_1962	0.29	-2.5
2,390,589	-		Sama_1962	0.29	+0.5
2,390,627	+		Sama_1962	0.33	-2.8
2,390,628	-		Sama_1962	0.33	-1.8
2,390,628	-		Sama_1962	0.33	-1.4
2,390,628	-		Sama_1962	0.33	-3.3
2,390,628	-		Sama_1962	0.33	-2.8
2,390,632	+		Sama_1962	0.34	-1.5
2,390,633	-		Sama_1962	0.34	+0.1
2,390,665	-		Sama_1962	0.37	-2.9
2,390,740	+		Sama_1962	0.45	-1.0
2,390,767	+		Sama_1962	0.48	-1.5
2,390,768	-		Sama_1962	0.48	-0.8
2,390,768	-		Sama_1962	0.48	-1.0
2,390,768	-		Sama_1962	0.48	-3.5
2,390,786	+		Sama_1962	0.50	+0.5
2,390,787	-		Sama_1962	0.50	-1.5
2,390,787	-		Sama_1962	0.50	-1.2
2,390,810	-		Sama_1962	0.53	-0.8
2,390,834	-		Sama_1962	0.55	-0.5
2,390,959	+		Sama_1962	0.69	-1.9
2,390,960	-		Sama_1962	0.69	-0.6
2,390,960	-		Sama_1962	0.69	-4.2
2,391,000	-		Sama_1962	0.73	-2.3
2,391,000	-		Sama_1962	0.73	-1.0
2,391,095	-		Sama_1962	0.83	-1.9
2,391,095	-		Sama_1962	0.83	-2.0
2,391,210	+				-1.0
2,391,211	-				-0.1
2,391,211	-				-1.8
2,391,257	-				-1.0
2,391,257	-				-1.2
2,391,277	+				-1.0
2,391,278	-				-0.5
2,391,313	+				-2.6
2,391,314	-				-2.0
2,391,314	-				-0.8
2,391,317	-				-2.5
2,391,324	-				-0.2
2,391,339	-				-1.5
2,391,339	-				-2.5
2,391,339	-				-1.3
2,391,345	-				-3.7
2,391,345	-				-2.5
2,391,426	-				-3.3
2,391,462	-				-0.8
2,391,470	-				-0.0
2,391,484	-				-3.0
2,391,484	-				-1.8
2,391,496	+				-2.0
2,391,497	-				+1.1
2,391,553	-		Sama_1963	0.12	-2.3
2,391,553	-		Sama_1963	0.12	-2.4
2,391,624	-		Sama_1963	0.16	-0.5
2,391,670	-		Sama_1963	0.18	-1.8
2,391,683	-		Sama_1963	0.19	-2.0
2,391,683	-		Sama_1963	0.19	-1.2
2,391,683	-		Sama_1963	0.19	-1.5
2,391,686	+		Sama_1963	0.19	-4.0
2,391,687	-		Sama_1963	0.19	-1.9
2,391,687	-		Sama_1963	0.19	-1.9
2,391,701	-		Sama_1963	0.20	-2.5
2,391,834	+		Sama_1963	0.27	-0.0
2,391,942	+		Sama_1963	0.32	-0.8
2,391,943	-		Sama_1963	0.32	-1.0
2,391,943	-		Sama_1963	0.32	-2.8
2,391,943	-		Sama_1963	0.32	-2.6
2,392,151	+		Sama_1963	0.43	-2.5
2,392,152	-		Sama_1963	0.43	-2.3
2,392,152	-		Sama_1963	0.43	-3.7
2,392,152	-		Sama_1963	0.43	-1.8
2,392,225	-		Sama_1963	0.47	-1.5
2,392,255	-		Sama_1963	0.49	-3.0
2,392,277	-		Sama_1963	0.50	-2.3
2,392,277	-		Sama_1963	0.50	-3.8
2,392,292	+		Sama_1963	0.51	-3.3
2,392,307	+		Sama_1963	0.52	-1.0
2,392,308	-		Sama_1963	0.52	-1.3
2,392,308	-		Sama_1963	0.52	-0.2
2,392,308	-		Sama_1963	0.52	-2.3
2,392,436	-		Sama_1963	0.58	-2.9
2,392,603	-		Sama_1963	0.67	-3.2
2,392,603	-		Sama_1963	0.67	-4.0
2,392,712	-		Sama_1963	0.73	-2.5
2,392,712	-		Sama_1963	0.73	-1.8
2,392,712	-		Sama_1963	0.73	-1.5
2,392,712	-		Sama_1963	0.73	-1.0
2,392,712	-		Sama_1963	0.73	-1.5
2,392,712	-		Sama_1963	0.73	-1.7
2,392,712	-		Sama_1963	0.73	-1.5
2,392,716	-		Sama_1963	0.73	-1.0
2,392,716	-		Sama_1963	0.73	-1.0
2,392,716	-		Sama_1963	0.73	-1.7
2,392,716	-		Sama_1963	0.73	-0.5
2,392,716	-		Sama_1963	0.73	-2.5
2,392,716	-		Sama_1963	0.73	-2.5
2,392,716	-		Sama_1963	0.73	-1.3
2,392,716	-		Sama_1963	0.73	-1.5
2,392,716	-		Sama_1963	0.73	-1.3
2,392,716	-		Sama_1963	0.73	-2.9
2,392,718	-		Sama_1963	0.73	-1.9
2,392,718	-		Sama_1963	0.73	-1.5
2,392,718	-		Sama_1963	0.73	-1.5
2,392,718	-		Sama_1963	0.73	-3.2
2,392,761	-		Sama_1963	0.75	-1.9
2,392,883	-		Sama_1963	0.82	-0.9
2,392,883	-		Sama_1963	0.82	-2.9
2,392,928	-		Sama_1963	0.84	-1.5
2,392,953	-		Sama_1963	0.85	-4.3
2,392,971	-		Sama_1963	0.86	-1.9
2,393,071	-				-0.9
2,393,077	-				-2.5
2,393,141	-				-2.3
2,393,245	+				-3.2
2,393,245	+				-0.8
2,393,245	+				-0.5
2,393,246	-				+0.1
2,393,246	-				-3.0
2,393,246	-				-2.3
2,393,246	-				-0.6
2,393,246	-				-1.8
2,393,247	+				-1.8
2,393,247	+				-3.2
2,393,247	+				-1.8
2,393,248	-				-0.9
2,393,248	-				+1.9
2,393,248	-				-0.5
2,393,248	-				-1.5
2,393,248	-				+1.5
2,393,248	-				-3.2
2,393,248	-				-1.8
2,393,248	-				+0.6
2,393,248	-				-1.3
2,393,248	-				-0.7
2,393,248	-				-1.3
2,393,248	-				-0.0
2,393,248	-				-2.5
2,393,249	+				-1.7
2,393,249	+				-0.5
2,393,250	-				-0.9
2,393,250	-				-0.8
2,393,250	-				-1.8
2,393,250	-				-1.8
2,393,250	-				+0.2
2,393,250	-				-0.8
2,393,250	-				-1.4
2,393,250	-				-1.3
2,393,250	-				-2.5
2,393,252	-				-1.6
2,393,252	-				+0.3
2,393,252	-				-1.0
2,393,260	-				+0.1
2,393,260	-				-1.8
2,393,260	-				-2.6
2,393,260	-				-1.8
2,393,263	-				+1.0
2,393,263	-				-1.4
2,393,309	-				-1.5
2,393,347	-				-2.0
2,393,347	-				-3.4
2,393,350	-		Sama_1964	0.10	-2.0
2,393,460	+		Sama_1964	0.23	+0.3
2,393,461	-		Sama_1964	0.23	-2.8
2,393,461	-		Sama_1964	0.23	-2.9
2,393,461	-		Sama_1964	0.23	-1.5
2,393,461	-		Sama_1964	0.23	-2.8
2,393,461	-		Sama_1964	0.23	-0.6
2,393,461	-		Sama_1964	0.23	-3.8
2,393,461	-		Sama_1964	0.23	-1.0
2,393,461	-		Sama_1964	0.23	+1.1
2,393,461	-		Sama_1964	0.23	-1.8
2,393,481	-		Sama_1964	0.25	-2.0
2,393,482	-		Sama_1964	0.25	-3.2
2,393,503	-		Sama_1964	0.28	-2.3
2,393,503	-		Sama_1964	0.28	-1.0
2,393,503	-		Sama_1964	0.28	-1.0
2,393,503	-		Sama_1964	0.28	-2.2
2,393,513	-		Sama_1964	0.29	+0.5
2,393,549	-		Sama_1964	0.33	-0.6
2,393,614	-		Sama_1964	0.40	-2.6
2,393,671	+		Sama_1964	0.47	-2.5
2,393,672	-		Sama_1964	0.47	-2.5
2,393,770	+		Sama_1964	0.58	-1.4
2,393,771	-		Sama_1964	0.58	-1.8
2,393,836	+		Sama_1964	0.66	-1.9
2,393,837	-		Sama_1964	0.66	-2.4
2,394,033	-		Sama_1964	0.88	-3.7
2,394,075	-				-2.8
2,394,075	-				-1.5
2,394,075	-				-2.0
2,394,075	-				-0.6
2,394,085	-				-2.0
2,394,118	-				-1.5
2,394,172	-				+2.0