Strain Fitness in Shewanella amazonensis SB2B around Sama_1241

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
1,524,093	-		Sama_1240	0.33	-0.2
1,524,163	+		Sama_1240	0.38	-1.2
1,524,163	+		Sama_1240	0.38	+0.5
1,524,164	-		Sama_1240	0.38	-1.2
1,524,164	-		Sama_1240	0.38	+1.5
1,524,201	+		Sama_1240	0.40	+0.8
1,524,207	-		Sama_1240	0.41	-0.2
1,524,245	+		Sama_1240	0.43	-0.2
1,524,275	+		Sama_1240	0.46	+0.3
1,524,275	+		Sama_1240	0.46	-0.9
1,524,275	+		Sama_1240	0.46	+0.0
1,524,279	-		Sama_1240	0.46	+0.1
1,524,279	-		Sama_1240	0.46	-0.8
1,524,318	+		Sama_1240	0.49	-0.1
1,524,319	-		Sama_1240	0.49	+0.7
1,524,373	+		Sama_1240	0.52	+1.4
1,524,373	+		Sama_1240	0.52	+0.9
1,524,373	+		Sama_1240	0.52	-2.2
1,524,373	+		Sama_1240	0.52	+1.8
1,524,373	+		Sama_1240	0.52	-0.0
1,524,373	+		Sama_1240	0.52	-1.0
1,524,374	-		Sama_1240	0.53	-0.7
1,524,374	-		Sama_1240	0.53	+0.1
1,524,374	-		Sama_1240	0.53	+0.7
1,524,407	+		Sama_1240	0.55	+1.7
1,524,407	+		Sama_1240	0.55	-1.6
1,524,438	-		Sama_1240	0.57	+0.4
1,524,438	-		Sama_1240	0.57	+0.2
1,524,466	+		Sama_1240	0.59	+0.8
1,524,467	-		Sama_1240	0.59	+0.2
1,524,562	-		Sama_1240	0.66	+0.7
1,524,661	+		Sama_1240	0.73	-1.2
1,524,712	+		Sama_1240	0.76	+0.5
1,524,909	+				+0.1
1,524,909	+				-0.1
1,524,910	-				+0.9
1,524,967	-				-0.6
1,525,022	+				-1.0
1,525,065	-				+0.4
1,525,320	+		Sama_1241	0.23	+4.1
1,525,321	-		Sama_1241	0.23	-0.9
1,525,321	-		Sama_1241	0.23	-1.6
1,525,321	-		Sama_1241	0.23	+1.5
1,525,385	+		Sama_1241	0.29	-1.0
1,525,442	+		Sama_1241	0.34	-0.0
1,525,453	+		Sama_1241	0.35	+0.5
1,525,453	+		Sama_1241	0.35	+0.4
1,525,454	-		Sama_1241	0.35	-0.3
1,525,462	+		Sama_1241	0.36	+0.3
1,525,512	+		Sama_1241	0.40	+0.2
1,525,579	+		Sama_1241	0.46	-0.1
1,525,579	+		Sama_1241	0.46	-0.1
1,525,579	+		Sama_1241	0.46	+0.8
1,525,609	+		Sama_1241	0.49	-0.9
1,525,634	+		Sama_1241	0.52	+0.3
1,525,635	-		Sama_1241	0.52	-2.9
1,525,647	+		Sama_1241	0.53	+1.1
1,525,647	+		Sama_1241	0.53	+0.9
1,525,648	-		Sama_1241	0.53	+0.3
1,525,691	+		Sama_1241	0.57	+1.3
1,525,692	-		Sama_1241	0.57	+0.5
1,525,799	+		Sama_1241	0.67	-0.3
1,525,799	+		Sama_1241	0.67	+0.7
1,525,800	-		Sama_1241	0.67	-0.5
1,525,800	-		Sama_1241	0.67	+1.5
1,525,818	-		Sama_1241	0.68	-1.0
1,525,858	+		Sama_1241	0.72	-0.9
1,525,858	+		Sama_1241	0.72	+0.1
1,525,858	+		Sama_1241	0.72	+0.6
1,525,859	-		Sama_1241	0.72	-0.9
1,525,865	+		Sama_1241	0.73	-0.7
1,525,865	+		Sama_1241	0.73	-1.3
1,525,866	-		Sama_1241	0.73	+1.0
1,525,866	-		Sama_1241	0.73	+0.6
1,525,866	-		Sama_1241	0.73	+2.0
1,525,930	+		Sama_1241	0.79	+1.0
1,525,930	+		Sama_1241	0.79	-0.7
1,525,930	+		Sama_1241	0.79	+1.5
1,525,930	+		Sama_1241	0.79	+0.1
1,525,930	+		Sama_1241	0.79	+0.4
1,525,930	+		Sama_1241	0.79	+1.1
1,525,931	-		Sama_1241	0.79	-2.3
1,525,931	-		Sama_1241	0.79	+0.9
1,526,083	+				-1.3
1,526,084	-				+0.4
1,526,095	+				+1.5
1,526,150	-				-1.9
1,526,211	+				+0.5
1,526,211	+				+0.1
1,526,212	-				-0.4
1,526,237	-				-0.7
1,526,238	+				-1.3
1,526,246	+				-2.8
1,526,272	+				-0.9
1,526,273	-				+0.7
1,526,292	+				-1.5
1,526,357	+				-0.9
1,526,376	+				-0.0
1,526,377	-				-0.0
1,526,377	-				-0.1
1,526,429	+		Sama_1242	0.13	+0.3
1,526,429	+		Sama_1242	0.13	-0.4
1,526,429	+		Sama_1242	0.13	-0.7
1,526,429	+		Sama_1242	0.13	-1.2
1,526,429	+		Sama_1242	0.13	-0.4
1,526,430	-		Sama_1242	0.13	+0.3
1,526,430	-		Sama_1242	0.13	+2.0
1,526,431	+		Sama_1242	0.13	-0.9
1,526,431	+		Sama_1242	0.13	-0.7
1,526,431	+		Sama_1242	0.13	+1.3
1,526,431	+		Sama_1242	0.13	-0.8
1,526,432	-		Sama_1242	0.13	+0.9
1,526,432	-		Sama_1242	0.13	+0.2
1,526,435	+		Sama_1242	0.14	-0.1
1,526,435	+		Sama_1242	0.14	-0.5
1,526,435	+		Sama_1242	0.14	+0.8
1,526,436	-		Sama_1242	0.14	-0.1
1,526,436	-		Sama_1242	0.14	-0.8
1,526,491	-		Sama_1242	0.18	+0.3
1,526,491	-		Sama_1242	0.18	-0.1
1,526,516	-		Sama_1242	0.21	-1.1
1,526,600	+		Sama_1242	0.28	+0.4
1,526,600	+		Sama_1242	0.28	-0.3
1,526,600	+		Sama_1242	0.28	+0.5
1,526,600	+		Sama_1242	0.28	+1.9
1,526,601	-		Sama_1242	0.28	-1.5
1,526,601	-		Sama_1242	0.28	+3.3
1,526,601	-		Sama_1242	0.28	+1.7
1,526,601	-		Sama_1242	0.28	+2.1
1,526,608	+		Sama_1242	0.28	-0.9
1,526,608	+		Sama_1242	0.28	+1.7
1,526,608	+		Sama_1242	0.28	-1.9
1,526,609	-		Sama_1242	0.28	+0.3
1,526,655	+		Sama_1242	0.32	-1.1
1,526,671	+		Sama_1242	0.34	+0.6
1,526,672	-		Sama_1242	0.34	-2.9
1,526,672	-		Sama_1242	0.34	+1.9
1,526,710	+		Sama_1242	0.37	+0.1
1,526,710	+		Sama_1242	0.37	+0.4
1,526,757	+		Sama_1242	0.41	-1.2
1,526,757	+		Sama_1242	0.41	+0.7
1,526,757	+		Sama_1242	0.41	-0.6
1,526,807	-		Sama_1242	0.45	-1.3
1,526,827	+		Sama_1242	0.47	-0.6
1,526,828	-		Sama_1242	0.47	+0.9
1,526,869	+		Sama_1242	0.51	-0.6
1,526,869	+		Sama_1242	0.51	+1.5
1,526,870	-		Sama_1242	0.51	-0.3
1,526,870	-		Sama_1242	0.51	-0.5
1,526,870	-		Sama_1242	0.51	-0.1
1,526,894	+		Sama_1242	0.53	+0.7
1,526,894	+		Sama_1242	0.53	-1.1
1,526,894	+		Sama_1242	0.53	-2.5
1,526,895	-		Sama_1242	0.53	+0.7
1,526,895	-		Sama_1242	0.53	+1.5
1,526,983	+		Sama_1242	0.60	+0.5
1,526,984	-		Sama_1242	0.60	-0.3
1,526,985	+		Sama_1242	0.60	+1.3
1,526,985	+		Sama_1242	0.60	+0.7
1,526,986	-		Sama_1242	0.60	+0.7
1,526,986	-		Sama_1242	0.60	-1.3
1,527,021	+		Sama_1242	0.63	-0.2
1,527,021	+		Sama_1242	0.63	-2.5
1,527,021	+		Sama_1242	0.63	+1.0
1,527,042	+		Sama_1242	0.65	+0.3
1,527,043	-		Sama_1242	0.65	-0.2
1,527,071	-		Sama_1242	0.68	-1.3
1,527,125	+		Sama_1242	0.72	-0.8
1,527,125	+		Sama_1242	0.72	+0.2
1,527,128	+		Sama_1242	0.73	-2.1
1,527,128	+		Sama_1242	0.73	-0.2
1,527,139	+		Sama_1242	0.73	+0.3
1,527,140	-		Sama_1242	0.74	+1.0