Strain Fitness in Shewanella amazonensis SB2B around Sama_1107

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
1,341,221	+				-0.5
1,341,272	+				+0.4
1,341,343	-				+1.1
1,341,395	-				+0.1
1,341,395	-				-1.4
1,341,462	+		Sama_1106	0.19	+0.2
1,341,462	+		Sama_1106	0.19	+0.9
1,341,463	-		Sama_1106	0.19	-0.1
1,341,487	-		Sama_1106	0.24	-0.4
1,341,520	+		Sama_1106	0.31	-1.8
1,341,521	-		Sama_1106	0.32	-0.2
1,341,667	+		Sama_1106	0.64	-0.2
1,341,685	+		Sama_1106	0.68	+1.2
1,341,687	+		Sama_1106	0.68	+3.1
1,341,688	-		Sama_1106	0.68	-1.8
1,341,688	-		Sama_1106	0.68	+0.4
1,341,688	-		Sama_1106	0.68	+0.9
1,341,688	-		Sama_1106	0.68	-0.2
1,341,759	+		Sama_1106	0.84	+0.1
1,341,759	+		Sama_1106	0.84	-0.7
1,341,759	+		Sama_1106	0.84	-1.5
1,341,760	-		Sama_1106	0.84	-0.8
1,341,760	-		Sama_1106	0.84	-0.5
1,341,760	-		Sama_1106	0.84	+1.0
1,341,760	-		Sama_1106	0.84	+0.7
1,341,760	-		Sama_1106	0.84	+1.5
1,341,785	+		Sama_1106	0.89	+0.3
1,341,786	-		Sama_1106	0.90	+0.1
1,341,826	+				+0.2
1,341,836	+				+0.1
1,341,836	+				+0.6
1,341,836	+				-0.2
1,341,837	-				-1.8
1,341,837	-				+0.8
1,341,837	-				-0.0
1,341,839	+				+1.5
1,341,840	-				+1.9
1,341,840	-				+0.6
1,341,840	-				-0.1
1,341,840	-				-1.6
1,341,850	-				-0.3
1,341,902	+				+0.6
1,341,903	-				-0.2
1,341,936	+				-1.6
1,341,937	-				-3.3
1,342,000	+				-1.2
1,342,040	-				+0.4
1,342,117	+				-0.8
1,342,117	+				+0.2
1,342,118	-				-0.1
1,342,118	-				-1.2
1,342,182	-				+0.6
1,342,202	+				+0.6
1,342,202	+				-1.2
1,342,202	+				+0.4
1,342,203	-				-0.4
1,342,236	+				+0.4
1,342,236	+				-0.4
1,342,237	-				+1.2
1,342,239	+				-0.3
1,342,240	-				-2.0
1,342,240	-				+0.7
1,342,261	+				+0.2
1,342,262	-				+1.1
1,342,262	-				+0.1
1,342,379	+		Sama_1107	0.27	-0.2
1,342,379	+		Sama_1107	0.27	-0.6
1,342,380	-		Sama_1107	0.27	+0.5
1,342,380	-		Sama_1107	0.27	-0.9
1,342,438	+		Sama_1107	0.37	-0.4
1,342,562	+		Sama_1107	0.57	-1.4
1,342,562	+		Sama_1107	0.57	+0.2
1,342,650	+		Sama_1107	0.72	+1.3
1,342,651	-		Sama_1107	0.72	-2.4
1,342,651	-		Sama_1107	0.72	-1.5
1,342,651	-		Sama_1107	0.72	-0.6
1,342,651	-		Sama_1107	0.72	-0.6
1,342,680	+		Sama_1107	0.77	+0.7
1,342,681	-		Sama_1107	0.77	-0.5
1,342,681	-		Sama_1107	0.77	-0.5
1,342,681	-		Sama_1107	0.77	-0.1
1,342,693	+		Sama_1107	0.79	-0.2
1,342,693	+		Sama_1107	0.79	+0.0
1,342,693	+		Sama_1107	0.79	-1.2
1,342,694	-		Sama_1107	0.80	-0.2
1,342,694	-		Sama_1107	0.80	+0.4
1,342,707	+		Sama_1107	0.82	-0.1
1,342,707	+		Sama_1107	0.82	-1.3
1,342,708	-		Sama_1107	0.82	-1.2
1,342,708	-		Sama_1107	0.82	-0.2
1,342,712	+		Sama_1107	0.82	+1.7
1,342,843	+				+0.3
1,342,843	+				+0.4
1,342,904	+				+0.9
1,342,919	+				+0.7
1,342,970	+				-0.2
1,342,971	-				+0.1
1,342,987	+				+1.4
1,343,042	-				+0.6
1,343,070	-				+1.7
1,343,108	+				+0.4
1,343,109	-				+1.7
1,343,198	+		Sama_1108	0.11	+0.8
1,343,198	+		Sama_1108	0.11	+0.7
1,343,198	+		Sama_1108	0.11	-2.5
1,343,216	+		Sama_1108	0.12	-0.2
1,343,217	-		Sama_1108	0.12	-0.3
1,343,283	+		Sama_1108	0.15	+0.5
1,343,283	+		Sama_1108	0.15	+1.1
1,343,284	-		Sama_1108	0.16	+0.2
1,343,284	-		Sama_1108	0.16	+0.2
1,343,284	-		Sama_1108	0.16	+0.2
1,343,284	-		Sama_1108	0.16	+0.4
1,343,284	-		Sama_1108	0.16	-0.5
1,343,316	+		Sama_1108	0.17	-0.1
1,343,317	-		Sama_1108	0.17	-0.4
1,343,317	-		Sama_1108	0.17	+0.5
1,343,317	-		Sama_1108	0.17	+0.4
1,343,341	+		Sama_1108	0.18	+0.4
1,343,341	+		Sama_1108	0.18	-0.2
1,343,342	-		Sama_1108	0.18	+1.3
1,343,346	-		Sama_1108	0.19	-0.2
1,343,385	-		Sama_1108	0.20	-1.2
1,343,396	+		Sama_1108	0.21	-1.1
1,343,396	+		Sama_1108	0.21	-2.5
1,343,396	+		Sama_1108	0.21	+1.0
1,343,397	-		Sama_1108	0.21	-0.5
1,343,397	-		Sama_1108	0.21	-0.8
1,343,457	+		Sama_1108	0.24	+0.1
1,343,457	+		Sama_1108	0.24	+0.8
1,343,458	-		Sama_1108	0.24	+2.1
1,343,458	-		Sama_1108	0.24	-1.5
1,343,485	-		Sama_1108	0.25	-1.4
1,343,570	+		Sama_1108	0.30	+0.9
1,343,570	+		Sama_1108	0.30	+0.1
1,343,570	+		Sama_1108	0.30	-1.9
1,343,570	+		Sama_1108	0.30	-1.5
1,343,570	+		Sama_1108	0.30	+0.2
1,343,571	-		Sama_1108	0.30	-1.2
1,343,571	-		Sama_1108	0.30	+1.8
1,343,571	-		Sama_1108	0.30	-0.6
1,343,571	-		Sama_1108	0.30	-0.2
1,343,571	-		Sama_1108	0.30	+0.1
1,343,571	-		Sama_1108	0.30	-0.8
1,343,571	-		Sama_1108	0.30	-0.8
1,343,662	+		Sama_1108	0.34	-0.2
1,343,662	+		Sama_1108	0.34	+0.6
1,343,662	+		Sama_1108	0.34	-2.0
1,343,662	+		Sama_1108	0.34	+1.6
1,343,662	+		Sama_1108	0.34	-1.5
1,343,662	+		Sama_1108	0.34	+0.0
1,343,662	+		Sama_1108	0.34	+1.1
1,343,663	-		Sama_1108	0.34	-0.2
1,343,663	-		Sama_1108	0.34	+1.5
1,343,663	-		Sama_1108	0.34	+0.3
1,343,663	-		Sama_1108	0.34	+1.0
1,343,670	-		Sama_1108	0.35	-1.2
1,343,700	-		Sama_1108	0.36	+0.3
1,343,712	+		Sama_1108	0.37	+0.3
1,343,712	+		Sama_1108	0.37	-0.4
1,343,713	-		Sama_1108	0.37	-0.5
1,343,789	+		Sama_1108	0.40	-1.1
1,343,789	+		Sama_1108	0.40	+1.1
1,343,790	-		Sama_1108	0.40	+0.9
1,343,790	-		Sama_1108	0.40	-0.4
1,343,801	-		Sama_1108	0.41	+1.4