Strain Fitness in Shewanella amazonensis SB2B around Sama_1105

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
1,336,719	-				-2.5
1,336,804	+				-0.4
1,336,804	+				-0.9
1,336,833	+				-0.1
1,336,858	+				-0.4
1,336,899	-				-0.9
1,336,934	-				-1.0
1,336,942	+				-1.2
1,336,943	-				-1.0
1,336,943	-				+1.5
1,336,943	-				-0.1
1,336,967	+				+0.4
1,336,968	-				+0.5
1,337,046	+				-0.0
1,337,047	-				+0.5
1,337,047	-				+0.6
1,337,047	-				+0.4
1,337,050	+				-2.4
1,337,050	+				-1.2
1,337,050	+				+1.2
1,337,050	+				-0.6
1,337,051	-				-0.7
1,337,051	-				-0.2
1,337,051	-				+0.3
1,337,051	-				-0.4
1,337,051	-				+0.3
1,337,051	-				+0.7
1,337,074	+				-0.3
1,337,074	+				-0.8
1,337,074	+				-0.8
1,337,075	-				-0.5
1,337,077	+				+0.1
1,337,077	+				+1.6
1,337,095	+		Sama_1104	0.12	-0.3
1,337,111	-		Sama_1104	0.14	+0.5
1,337,154	+		Sama_1104	0.20	-0.2
1,337,154	+		Sama_1104	0.20	+1.2
1,337,155	-		Sama_1104	0.20	+0.6
1,337,184	+		Sama_1104	0.25	-0.1
1,337,184	+		Sama_1104	0.25	-0.5
1,337,185	-		Sama_1104	0.25	-1.5
1,337,185	-		Sama_1104	0.25	-0.4
1,337,188	+		Sama_1104	0.25	+1.6
1,337,205	+		Sama_1104	0.28	-3.2
1,337,206	-		Sama_1104	0.28	+0.7
1,337,206	-		Sama_1104	0.28	-0.8
1,337,215	+		Sama_1104	0.29	+0.6
1,337,288	+		Sama_1104	0.40	+0.2
1,337,377	-		Sama_1104	0.54	+0.1
1,337,377	-		Sama_1104	0.54	-0.2
1,337,377	-		Sama_1104	0.54	+1.1
1,337,391	+		Sama_1104	0.56	-0.4
1,337,391	+		Sama_1104	0.56	+0.1
1,337,391	+		Sama_1104	0.56	+4.0
1,337,391	+		Sama_1104	0.56	+0.3
1,337,392	-		Sama_1104	0.56	-2.2
1,337,392	-		Sama_1104	0.56	+2.4
1,337,392	-		Sama_1104	0.56	-0.2
1,337,392	-		Sama_1104	0.56	+0.5
1,337,392	-		Sama_1104	0.56	-0.2
1,337,455	+		Sama_1104	0.65	-0.2
1,337,463	+		Sama_1104	0.67	-0.7
1,337,463	+		Sama_1104	0.67	+0.5
1,337,498	-		Sama_1104	0.72	+0.0
1,337,595	-		Sama_1104	0.86	+0.9
1,337,625	+				-0.1
1,337,625	+				+0.4
1,337,625	+				-1.8
1,337,625	+				-0.2
1,337,625	+				-1.2
1,337,626	-				+0.6
1,337,626	-				-0.2
1,337,626	-				-0.1
1,337,663	+				-0.2
1,337,664	-				-1.2
1,337,664	-				+1.4
1,337,668	+				-1.4
1,337,668	+				-1.5
1,337,669	-				-3.3
1,337,677	+				+2.4
1,337,678	-				+0.5
1,337,697	+				-0.2
1,337,697	+				-0.1
1,337,698	-				+1.0
1,337,706	+				-0.2
1,337,706	+				-1.2
1,337,706	+				-1.8
1,337,706	+				-1.0
1,337,706	+				+0.6
1,337,706	+				-0.8
1,337,707	-				-2.2
1,337,707	-				+1.2
1,337,953	+				-1.6
1,337,953	+				-0.8
1,337,977	+				+0.8
1,337,977	+				+0.9
1,337,978	-				-1.8
1,338,125	-		Sama_1105	0.12	+1.0
1,338,130	+		Sama_1105	0.12	+0.8
1,338,233	+		Sama_1105	0.15	+1.4
1,338,258	-		Sama_1105	0.16	+1.8
1,338,317	+		Sama_1105	0.18	+1.0
1,338,317	+		Sama_1105	0.18	+1.0
1,338,318	-		Sama_1105	0.18	+0.2
1,338,360	+		Sama_1105	0.19	-1.7
1,338,360	+		Sama_1105	0.19	+0.4
1,338,360	+		Sama_1105	0.19	-1.2
1,338,361	-		Sama_1105	0.19	+2.0
1,338,361	-		Sama_1105	0.19	+0.0
1,338,361	-		Sama_1105	0.19	+0.7
1,338,361	-		Sama_1105	0.19	-0.2
1,338,467	+		Sama_1105	0.22	+1.1
1,338,468	-		Sama_1105	0.22	+0.5
1,338,468	-		Sama_1105	0.22	+0.6
1,338,468	-		Sama_1105	0.22	+0.8
1,338,534	+		Sama_1105	0.24	+0.9
1,338,634	+		Sama_1105	0.27	-0.4
1,338,634	+		Sama_1105	0.27	-0.2
1,338,634	+		Sama_1105	0.27	-0.0
1,338,634	+		Sama_1105	0.27	+0.2
1,338,634	+		Sama_1105	0.27	-0.6
1,338,634	+		Sama_1105	0.27	-0.6
1,338,634	+		Sama_1105	0.27	-0.5
1,338,634	+		Sama_1105	0.27	+2.1
1,338,635	-		Sama_1105	0.27	+1.6
1,338,635	-		Sama_1105	0.27	+1.3
1,338,635	-		Sama_1105	0.27	-0.1
1,338,635	-		Sama_1105	0.27	-0.0
1,338,635	-		Sama_1105	0.27	-0.7
1,338,689	-		Sama_1105	0.28	-1.6
1,338,691	+		Sama_1105	0.28	-1.8
1,338,691	+		Sama_1105	0.28	+0.6
1,338,691	+		Sama_1105	0.28	+0.5
1,338,691	+		Sama_1105	0.28	+0.8
1,338,691	+		Sama_1105	0.28	-0.1
1,338,691	+		Sama_1105	0.28	+0.8
1,338,692	-		Sama_1105	0.29	-1.1
1,338,692	-		Sama_1105	0.29	+0.1
1,338,692	-		Sama_1105	0.29	-0.7
1,338,692	-		Sama_1105	0.29	+0.1
1,338,692	-		Sama_1105	0.29	+0.8
1,338,692	-		Sama_1105	0.29	-1.2
1,338,704	+		Sama_1105	0.29	-0.1
1,338,704	+		Sama_1105	0.29	+0.3
1,338,704	+		Sama_1105	0.29	-0.9
1,338,704	+		Sama_1105	0.29	-0.7
1,338,705	-		Sama_1105	0.29	+0.4
1,338,759	+		Sama_1105	0.30	+0.1
1,338,772	+		Sama_1105	0.31	+1.1
1,338,773	-		Sama_1105	0.31	+0.1
1,338,797	-		Sama_1105	0.32	+1.5
1,338,812	+		Sama_1105	0.32	-1.3
1,338,813	-		Sama_1105	0.32	+0.3
1,338,866	-		Sama_1105	0.34	+0.0
1,338,876	-		Sama_1105	0.34	+1.1
1,338,971	+		Sama_1105	0.37	+0.8
1,338,972	-		Sama_1105	0.37	-0.8
1,339,048	-		Sama_1105	0.39	-0.5
1,339,076	-		Sama_1105	0.40	-0.9
1,339,182	+		Sama_1105	0.43	+1.4
1,339,183	-		Sama_1105	0.43	+0.5
1,339,183	-		Sama_1105	0.43	+1.4
1,339,183	-		Sama_1105	0.43	+0.0
1,339,183	-		Sama_1105	0.43	-1.5
1,339,227	+		Sama_1105	0.44	+1.0
1,339,228	-		Sama_1105	0.44	+0.6
1,339,243	-		Sama_1105	0.45	-0.2
1,339,334	+		Sama_1105	0.47	+0.3
1,339,334	+		Sama_1105	0.47	+1.2
1,339,335	-		Sama_1105	0.47	+1.0
1,339,335	-		Sama_1105	0.47	-0.1
1,339,374	+		Sama_1105	0.48	-0.2
1,339,375	-		Sama_1105	0.48	-0.1
1,339,403	+		Sama_1105	0.49	+0.8
1,339,431	+		Sama_1105	0.50	-0.9
1,339,431	+		Sama_1105	0.50	+0.4
1,339,561	+		Sama_1105	0.54	-1.4
1,339,562	-		Sama_1105	0.54	-1.7
1,339,583	+		Sama_1105	0.55	+0.3
1,339,584	-		Sama_1105	0.55	+0.6
1,339,607	+		Sama_1105	0.55	-0.2
1,339,619	+		Sama_1105	0.56	-0.0
1,339,619	+		Sama_1105	0.56	-0.5
1,339,620	-		Sama_1105	0.56	+0.4
1,339,620	-		Sama_1105	0.56	-0.0
1,339,620	-		Sama_1105	0.56	+0.6
1,339,620	-		Sama_1105	0.56	+0.8
1,339,639	-		Sama_1105	0.56	+1.6
1,339,639	-		Sama_1105	0.56	-1.2
1,339,639	-		Sama_1105	0.56	+0.6
1,339,859	+		Sama_1105	0.63	-1.1
1,339,883	+		Sama_1105	0.63	-0.2
1,339,883	+		Sama_1105	0.63	+0.3
1,339,883	+		Sama_1105	0.63	-0.8
1,339,883	+		Sama_1105	0.63	-0.3
1,339,884	-		Sama_1105	0.63	+0.5
1,339,955	+		Sama_1105	0.65	+0.5
1,339,955	+		Sama_1105	0.65	-0.9
1,339,956	-		Sama_1105	0.65	+0.4
1,339,970	+		Sama_1105	0.66	+0.4
1,339,971	-		Sama_1105	0.66	+1.6
1,340,058	+		Sama_1105	0.68	+0.7
1,340,059	-		Sama_1105	0.68	-0.1
1,340,110	+		Sama_1105	0.70	-1.2
1,340,110	+		Sama_1105	0.70	-0.5
1,340,111	-		Sama_1105	0.70	-2.4
1,340,291	+		Sama_1105	0.75	-1.9
1,340,291	+		Sama_1105	0.75	+1.4
1,340,337	+		Sama_1105	0.77	-0.2
1,340,337	+		Sama_1105	0.77	-0.5
1,340,337	+		Sama_1105	0.77	-1.2
1,340,337	+		Sama_1105	0.77	+0.5
1,340,342	+		Sama_1105	0.77	+0.7
1,340,342	+		Sama_1105	0.77	-0.2
1,340,342	+		Sama_1105	0.77	+0.3
1,340,342	+		Sama_1105	0.77	+0.1
1,340,342	+		Sama_1105	0.77	+0.1
1,340,342	+		Sama_1105	0.77	+0.4
1,340,343	-		Sama_1105	0.77	-1.2
1,340,343	-		Sama_1105	0.77	-0.2
1,340,343	-		Sama_1105	0.77	-0.2
1,340,344	+		Sama_1105	0.77	-0.8
1,340,344	+		Sama_1105	0.77	+0.3
1,340,344	+		Sama_1105	0.77	-0.1
1,340,344	+		Sama_1105	0.77	+1.5
1,340,344	+		Sama_1105	0.77	-0.8
1,340,344	+		Sama_1105	0.77	-2.5
1,340,345	-		Sama_1105	0.77	-0.4
1,340,345	-		Sama_1105	0.77	+1.2
1,340,345	-		Sama_1105	0.77	-0.2
1,340,345	-		Sama_1105	0.77	+0.8
1,340,345	-		Sama_1105	0.77	-0.1
1,340,345	-		Sama_1105	0.77	-0.9
1,340,366	+		Sama_1105	0.77	-0.7
1,340,395	+		Sama_1105	0.78	+1.0
1,340,395	+		Sama_1105	0.78	+0.8
1,340,395	+		Sama_1105	0.78	-0.8
1,340,396	-		Sama_1105	0.78	-0.0
1,340,396	-		Sama_1105	0.78	-0.5
1,340,396	-		Sama_1105	0.78	+2.3
1,340,445	+		Sama_1105	0.80	+0.5
1,340,469	-		Sama_1105	0.80	+0.2
1,340,469	-		Sama_1105	0.80	+0.7
1,340,474	+		Sama_1105	0.81	-2.0
1,340,496	-		Sama_1105	0.81	-0.3
1,340,542	+		Sama_1105	0.83	+1.4
1,340,542	+		Sama_1105	0.83	+1.1
1,340,542	+		Sama_1105	0.83	+1.0
1,340,543	-		Sama_1105	0.83	+0.5
1,340,543	-		Sama_1105	0.83	+0.5
1,340,543	-		Sama_1105	0.83	-0.7
1,340,567	+		Sama_1105	0.83	-0.8
1,340,567	+		Sama_1105	0.83	-1.0
1,340,581	+		Sama_1105	0.84	+0.0
1,340,582	-		Sama_1105	0.84	-0.5
1,340,691	+		Sama_1105	0.87	+0.5
1,340,691	+		Sama_1105	0.87	-2.0
1,340,691	+		Sama_1105	0.87	-0.1
1,340,691	+		Sama_1105	0.87	+0.0
1,340,691	+		Sama_1105	0.87	-0.6
1,340,691	+		Sama_1105	0.87	-0.5
1,340,691	+		Sama_1105	0.87	+0.9
1,340,691	+		Sama_1105	0.87	-0.0
1,340,691	+		Sama_1105	0.87	+0.6
1,340,691	+		Sama_1105	0.87	+0.7
1,340,691	+		Sama_1105	0.87	+0.1
1,340,692	-		Sama_1105	0.87	+1.3
1,340,692	-		Sama_1105	0.87	+0.0
1,340,692	-		Sama_1105	0.87	-0.1
1,340,692	-		Sama_1105	0.87	+0.6
1,340,745	+		Sama_1105	0.88	-1.8
1,340,745	+		Sama_1105	0.88	+1.6
1,340,745	+		Sama_1105	0.88	+1.1
1,340,745	+		Sama_1105	0.88	-0.2
1,340,746	-		Sama_1105	0.88	+1.9
1,340,746	-		Sama_1105	0.88	+0.2
1,340,746	-		Sama_1105	0.88	-2.4
1,340,746	-		Sama_1105	0.88	+0.8
1,340,746	-		Sama_1105	0.88	+0.0
1,340,867	-				+0.3
1,340,889	+				+0.5
1,340,889	+				-0.8
1,340,890	-				-0.0
1,340,916	-				+0.5
1,340,916	-				+1.9
1,340,962	-				+0.6
1,340,962	-				+0.6
1,340,999	+				+1.5
1,340,999	+				+1.8
1,341,000	-				+0.1
1,341,063	+				+0.8
1,341,064	-				+1.3
1,341,094	-				-0.5
1,341,196	-				-0.2
1,341,213	+				+0.3
1,341,214	-				-0.8
1,341,214	-				-2.0
1,341,221	+				-0.5
1,341,272	+				+0.4
1,341,343	-				+1.1
1,341,395	-				+0.1
1,341,395	-				-1.4
1,341,462	+		Sama_1106	0.19	+0.2
1,341,462	+		Sama_1106	0.19	+0.9
1,341,463	-		Sama_1106	0.19	-0.1
1,341,487	-		Sama_1106	0.24	-0.4
1,341,520	+		Sama_1106	0.31	-1.8
1,341,521	-		Sama_1106	0.32	-0.2
1,341,667	+		Sama_1106	0.64	-0.2
1,341,685	+		Sama_1106	0.68	+1.2
1,341,687	+		Sama_1106	0.68	+3.1
1,341,688	-		Sama_1106	0.68	-1.8
1,341,688	-		Sama_1106	0.68	+0.4
1,341,688	-		Sama_1106	0.68	+0.9
1,341,688	-		Sama_1106	0.68	-0.2
1,341,759	+		Sama_1106	0.84	+0.1
1,341,759	+		Sama_1106	0.84	-0.7
1,341,759	+		Sama_1106	0.84	-1.5
1,341,760	-		Sama_1106	0.84	-0.8
1,341,760	-		Sama_1106	0.84	-0.5
1,341,760	-		Sama_1106	0.84	+1.0
1,341,760	-		Sama_1106	0.84	+0.7
1,341,760	-		Sama_1106	0.84	+1.5
1,341,785	+		Sama_1106	0.89	+0.3
1,341,786	-		Sama_1106	0.90	+0.1
1,341,826	+				+0.2
1,341,836	+				+0.1
1,341,836	+				+0.6
1,341,836	+				-0.2
1,341,837	-				-1.8
1,341,837	-				+0.8
1,341,837	-				-0.0
1,341,839	+				+1.5
1,341,840	-				+1.9
1,341,840	-				+0.6
1,341,840	-				-0.1
1,341,840	-				-1.6
1,341,850	-				-0.3
1,341,902	+				+0.6
1,341,903	-				-0.2
1,341,936	+				-1.6
1,341,937	-				-3.3
1,342,000	+				-1.2
1,342,040	-				+0.4
1,342,117	+				-0.8
1,342,117	+				+0.2
1,342,118	-				-0.1
1,342,118	-				-1.2