Strain Fitness in Shewanella amazonensis SB2B around Sama_1087

Experiment: a-Ketoglutaric

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric
1,314,004	+		Sama_1086	0.34	+0.1
1,314,004	+		Sama_1086	0.34	-0.3
1,314,005	-		Sama_1086	0.34	-2.0
1,314,005	-		Sama_1086	0.34	-0.3
1,314,070	+		Sama_1086	0.39	+1.4
1,314,071	-		Sama_1086	0.39	-0.2
1,314,178	+		Sama_1086	0.47	-1.5
1,314,178	+		Sama_1086	0.47	-1.4
1,314,178	+		Sama_1086	0.47	-1.8
1,314,180	+		Sama_1086	0.47	-0.1
1,314,181	-		Sama_1086	0.47	-0.1
1,314,181	-		Sama_1086	0.47	-2.5
1,314,181	-		Sama_1086	0.47	-0.5
1,314,181	-		Sama_1086	0.47	+0.4
1,314,181	-		Sama_1086	0.47	-0.0
1,314,244	+		Sama_1086	0.52	+0.6
1,314,244	+		Sama_1086	0.52	-1.2
1,314,244	+		Sama_1086	0.52	-1.0
1,314,244	+		Sama_1086	0.52	-1.4
1,314,244	+		Sama_1086	0.52	+0.5
1,314,244	+		Sama_1086	0.52	-0.6
1,314,244	+		Sama_1086	0.52	-1.2
1,314,245	-		Sama_1086	0.52	-0.2
1,314,245	-		Sama_1086	0.52	+0.0
1,314,245	-		Sama_1086	0.52	-0.9
1,314,445	+		Sama_1086	0.67	-1.2
1,314,446	-		Sama_1086	0.67	-1.4
1,314,446	-		Sama_1086	0.67	-1.4
1,314,446	-		Sama_1086	0.67	+0.8
1,314,450	-		Sama_1086	0.67	-0.8
1,314,450	-		Sama_1086	0.67	+1.0
1,314,450	-		Sama_1086	0.67	+1.0
1,314,450	-		Sama_1086	0.67	+1.8
1,314,485	-		Sama_1086	0.69	-0.5
1,314,587	+		Sama_1086	0.77	+0.4
1,314,588	-		Sama_1086	0.77	-1.0
1,314,588	-		Sama_1086	0.77	-0.8
1,314,588	-		Sama_1086	0.77	-1.8
1,314,588	-		Sama_1086	0.77	-1.5
1,314,596	-		Sama_1086	0.78	-0.6
1,314,652	+		Sama_1086	0.82	+0.2
1,314,652	+		Sama_1086	0.82	+1.8
1,314,652	+		Sama_1086	0.82	-1.2
1,314,653	-		Sama_1086	0.82	+0.7
1,314,739	+		Sama_1086	0.88	-1.1
1,314,739	+		Sama_1086	0.88	+0.6
1,314,739	+		Sama_1086	0.88	-0.9
1,314,739	+		Sama_1086	0.88	+0.3
1,314,739	+		Sama_1086	0.88	-0.4
1,314,740	-		Sama_1086	0.88	+0.1
1,314,740	-		Sama_1086	0.88	+0.8
1,314,740	-		Sama_1086	0.88	-0.1
1,314,740	-		Sama_1086	0.88	-1.7
1,314,777	+				+0.3
1,314,777	+				+0.1
1,314,777	+				-2.0
1,314,815	-				+0.6
1,314,815	-				-0.1
1,314,852	+				+1.5
1,314,852	+				-0.2
1,314,852	+				-0.8
1,314,853	-				-0.8
1,315,129	+		Sama_1087	0.21	-0.8
1,315,149	+		Sama_1087	0.24	+0.2
1,315,149	+		Sama_1087	0.24	-2.0
1,315,149	+		Sama_1087	0.24	+0.0
1,315,149	+		Sama_1087	0.24	-0.4
1,315,149	+		Sama_1087	0.24	+0.0
1,315,149	+		Sama_1087	0.24	+2.0
1,315,149	+		Sama_1087	0.24	-1.5
1,315,149	+		Sama_1087	0.24	+1.0
1,315,149	+		Sama_1087	0.24	-0.5
1,315,150	-		Sama_1087	0.25	-2.4
1,315,150	-		Sama_1087	0.25	-1.5
1,315,150	-		Sama_1087	0.25	-1.0
1,315,150	-		Sama_1087	0.25	+0.3
1,315,150	-		Sama_1087	0.25	+0.4
1,315,153	+		Sama_1087	0.25	-3.1
1,315,153	+		Sama_1087	0.25	-1.2
1,315,153	+		Sama_1087	0.25	-0.9
1,315,153	+		Sama_1087	0.25	+0.9
1,315,153	+		Sama_1087	0.25	+0.1
1,315,153	+		Sama_1087	0.25	-0.2
1,315,153	+		Sama_1087	0.25	-1.9
1,315,153	+		Sama_1087	0.25	-1.1
1,315,153	+		Sama_1087	0.25	-0.0
1,315,153	+		Sama_1087	0.25	+1.0
1,315,153	+		Sama_1087	0.25	-1.5
1,315,154	-		Sama_1087	0.25	-0.6
1,315,154	-		Sama_1087	0.25	+1.2
1,315,154	-		Sama_1087	0.25	+2.5
1,315,154	-		Sama_1087	0.25	-0.6
1,315,154	-		Sama_1087	0.25	-1.4
1,315,154	-		Sama_1087	0.25	+0.8
1,315,154	-		Sama_1087	0.25	+0.6
1,315,154	-		Sama_1087	0.25	-3.2
1,315,154	-		Sama_1087	0.25	+1.1
1,315,154	-		Sama_1087	0.25	+0.3
1,315,154	-		Sama_1087	0.25	+1.1
1,315,154	-		Sama_1087	0.25	-1.4
1,315,154	-		Sama_1087	0.25	-1.1
1,315,154	-		Sama_1087	0.25	+0.4
1,315,154	-		Sama_1087	0.25	-0.2
1,315,154	-		Sama_1087	0.25	-0.4
1,315,154	-		Sama_1087	0.25	-0.2
1,315,154	-		Sama_1087	0.25	-1.1
1,315,154	-		Sama_1087	0.25	-0.3
1,315,154	-		Sama_1087	0.25	-0.4
1,315,157	+		Sama_1087	0.26	-1.5
1,315,158	-		Sama_1087	0.26	-1.5
1,315,158	-		Sama_1087	0.26	+0.3
1,315,158	-		Sama_1087	0.26	+0.5
1,315,168	-		Sama_1087	0.27	-0.5
1,315,192	-		Sama_1087	0.31	+0.8
1,315,192	-		Sama_1087	0.31	-1.0
1,315,192	-		Sama_1087	0.31	-0.2
1,315,209	+		Sama_1087	0.33	-0.4
1,315,209	+		Sama_1087	0.33	-1.5
1,315,209	+		Sama_1087	0.33	-1.7
1,315,209	+		Sama_1087	0.33	-0.8
1,315,210	-		Sama_1087	0.33	+0.2
1,315,210	-		Sama_1087	0.33	+0.8
1,315,210	-		Sama_1087	0.33	+3.4
1,315,232	-		Sama_1087	0.37	+0.1
1,315,305	+		Sama_1087	0.48	-2.8
1,315,311	+		Sama_1087	0.49	-0.5
1,315,312	-		Sama_1087	0.49	-0.3
1,315,312	-		Sama_1087	0.49	-0.7
1,315,434	+		Sama_1087	0.67	-0.2
1,315,434	+		Sama_1087	0.67	-0.2
1,315,434	+		Sama_1087	0.67	-1.2
1,315,434	+		Sama_1087	0.67	-0.1
1,315,434	+		Sama_1087	0.67	-1.4
1,315,435	-		Sama_1087	0.67	-2.3
1,315,435	-		Sama_1087	0.67	+0.7
1,315,436	+		Sama_1087	0.67	-0.2
1,315,436	+		Sama_1087	0.67	-1.2
1,315,436	+		Sama_1087	0.67	-1.5
1,315,436	+		Sama_1087	0.67	-1.3
1,315,437	-		Sama_1087	0.67	-2.9
1,315,437	-		Sama_1087	0.67	-0.6
1,315,437	-		Sama_1087	0.67	+0.6
1,315,437	-		Sama_1087	0.67	-1.2
1,315,437	-		Sama_1087	0.67	+1.8
1,315,437	-		Sama_1087	0.67	-0.2
1,315,461	-		Sama_1087	0.71	+1.2
1,315,461	-		Sama_1087	0.71	-0.2
1,315,477	+		Sama_1087	0.73	+0.8
1,315,477	+		Sama_1087	0.73	-1.5
1,315,478	-		Sama_1087	0.74	-0.9
1,315,478	-		Sama_1087	0.74	-1.8
1,315,488	-		Sama_1087	0.75	+1.1
1,315,488	-		Sama_1087	0.75	-1.8
1,315,571	+		Sama_1087	0.87	+0.5
1,315,572	-		Sama_1087	0.88	-0.9
1,315,589	+				+0.4
1,315,590	-				-0.2
1,315,641	+				-0.6
1,315,641	+				+1.3
1,315,642	-				-0.5
1,315,642	-				+1.0
1,315,659	+				-3.0
1,315,659	+				+0.9
1,315,659	+				-0.8
1,315,659	+				-1.5
1,315,659	+				+0.4
1,315,659	+				+0.1
1,315,660	-				-1.4
1,315,660	-				+0.6
1,315,660	-				-0.8
1,315,660	-				+1.7
1,315,660	-				-0.9
1,315,660	-				-0.1
1,315,660	-				-0.4
1,315,668	-				-0.8
1,315,668	-				+0.1
1,315,880	-		Sama_1088	0.34	-1.0
1,315,954	-		Sama_1088	0.46	+0.4
1,316,109	+		Sama_1088	0.70	+0.5
1,316,109	+		Sama_1088	0.70	-0.8
1,316,109	+		Sama_1088	0.70	-1.5
1,316,110	-		Sama_1088	0.70	+0.6
1,316,110	-		Sama_1088	0.70	+0.4
1,316,160	+		Sama_1088	0.78	-0.1
1,316,224	+		Sama_1088	0.89	+0.5
1,316,224	+		Sama_1088	0.89	-0.8
1,316,224	+		Sama_1088	0.89	-1.8
1,316,337	-				+1.8
1,316,362	+				-1.0
1,316,362	+				-1.2
1,316,378	+				+0.2
1,316,379	-				+7.3
1,316,381	+				-0.0
1,316,381	+				+2.0
1,316,381	+				+0.4
1,316,381	+				-0.6
1,316,382	-				+6.6
1,316,382	-				+5.9
1,316,402	-				+4.7
1,316,527	-		Sama_1089	0.20	+6.2
1,316,542	+		Sama_1089	0.23	+8.7
1,316,542	+		Sama_1089	0.23	+6.4
1,316,572	+		Sama_1089	0.28	+5.9
1,316,593	+		Sama_1089	0.32	+6.5
1,316,599	+		Sama_1089	0.33	+6.9
1,316,600	-		Sama_1089	0.33	+5.0