Experiment: a-Ketoglutaric
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0556 and Sama_0557 are separated by 494 nucleotides Sama_0557 and Sama_0558 are separated by 120 nucleotides
Sama_0556: Sama_0556 - hypothetical protein (RefSeq), at 688,759 to 692,544
_0556
Sama_0557: Sama_0557 - no description, at 693,039 to 693,530
_0557
Sama_0558: Sama_0558 - hypothetical protein (RefSeq), at 693,651 to 694,433
_0558
Position (kb) 693
694 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 692.053 kb on + strand, within Sama_0556 at 692.053 kb on + strand, within Sama_0556 at 692.053 kb on + strand, within Sama_0556 at 692.053 kb on + strand, within Sama_0556 at 692.054 kb on - strand, within Sama_0556 at 692.070 kb on - strand, within Sama_0556 at 692.124 kb on + strand, within Sama_0556 at 692.125 kb on - strand, within Sama_0556 at 692.125 kb on - strand, within Sama_0556 at 692.125 kb on - strand, within Sama_0556 at 692.125 kb on - strand, within Sama_0556 at 692.125 kb on - strand, within Sama_0556 at 692.142 kb on + strand, within Sama_0556 at 692.142 kb on + strand, within Sama_0556 at 692.143 kb on - strand, within Sama_0556 at 692.179 kb on + strand at 692.179 kb on + strand at 692.180 kb on - strand at 692.180 kb on - strand at 692.180 kb on - strand at 692.180 kb on - strand at 692.180 kb on - strand at 692.180 kb on - strand at 692.206 kb on + strand at 692.207 kb on - strand at 692.244 kb on - strand at 692.256 kb on + strand at 692.256 kb on + strand at 692.256 kb on + strand at 692.257 kb on - strand at 692.257 kb on - strand at 692.321 kb on + strand at 692.321 kb on + strand at 692.321 kb on + strand at 692.322 kb on - strand at 692.322 kb on - strand at 692.322 kb on - strand at 692.328 kb on + strand at 692.328 kb on + strand at 692.362 kb on - strand at 692.363 kb on + strand at 692.363 kb on + strand at 692.363 kb on + strand at 692.363 kb on + strand at 692.363 kb on + strand at 692.363 kb on + strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.364 kb on - strand at 692.367 kb on + strand at 692.367 kb on + strand at 692.368 kb on - strand at 692.382 kb on + strand at 692.391 kb on + strand at 692.463 kb on + strand at 692.473 kb on - strand at 692.473 kb on - strand at 692.536 kb on - strand at 692.547 kb on + strand at 692.555 kb on + strand at 692.555 kb on + strand at 692.556 kb on - strand at 692.566 kb on + strand at 692.599 kb on + strand at 692.599 kb on + strand at 692.599 kb on + strand at 692.599 kb on + strand at 692.599 kb on + strand at 692.599 kb on + strand at 692.600 kb on - strand at 692.620 kb on - strand at 692.635 kb on - strand at 692.656 kb on + strand at 692.669 kb on + strand at 692.669 kb on + strand at 692.669 kb on + strand at 692.670 kb on - strand at 692.670 kb on - strand at 692.697 kb on + strand at 692.705 kb on + strand at 692.705 kb on + strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.706 kb on - strand at 692.769 kb on + strand at 692.769 kb on + strand at 692.769 kb on + strand at 692.796 kb on + strand at 692.796 kb on + strand at 692.822 kb on + strand at 692.918 kb on + strand at 692.918 kb on + strand at 692.918 kb on + strand at 692.926 kb on + strand at 692.927 kb on - strand at 692.931 kb on + strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.932 kb on - strand at 692.936 kb on - strand at 692.936 kb on - strand at 693.008 kb on + strand at 693.008 kb on + strand at 693.011 kb on + strand at 693.011 kb on + strand at 693.011 kb on + strand at 693.012 kb on - strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.040 kb on + strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.041 kb on - strand at 693.058 kb on + strand at 693.059 kb on - strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.076 kb on + strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.077 kb on - strand at 693.089 kb on + strand, within Sama_0557 at 693.089 kb on + strand, within Sama_0557 at 693.089 kb on + strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.090 kb on - strand, within Sama_0557 at 693.109 kb on + strand, within Sama_0557 at 693.109 kb on + strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.110 kb on - strand, within Sama_0557 at 693.123 kb on + strand, within Sama_0557 at 693.124 kb on - strand, within Sama_0557 at 693.136 kb on + strand, within Sama_0557 at 693.137 kb on - strand, within Sama_0557 at 693.243 kb on + strand, within Sama_0557 at 693.244 kb on - strand, within Sama_0557 at 693.271 kb on - strand, within Sama_0557 at 693.297 kb on + strand, within Sama_0557 at 693.372 kb on + strand, within Sama_0557 at 693.373 kb on - strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.402 kb on + strand, within Sama_0557 at 693.428 kb on - strand, within Sama_0557 at 693.428 kb on - strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.435 kb on + strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.436 kb on - strand, within Sama_0557 at 693.438 kb on - strand, within Sama_0557 at 693.438 kb on - strand, within Sama_0557 at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.485 kb on + strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.486 kb on - strand at 693.528 kb on + strand at 693.529 kb on - strand at 693.530 kb on + strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.531 kb on - strand at 693.548 kb on + strand at 693.549 kb on - strand at 693.618 kb on - strand at 693.618 kb on - strand at 693.633 kb on + strand at 693.633 kb on + strand at 693.634 kb on - strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.636 kb on + strand at 693.637 kb on - strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.662 kb on + strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.663 kb on - strand at 693.666 kb on - strand at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.740 kb on + strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.741 kb on - strand, within Sama_0558 at 693.752 kb on - strand, within Sama_0558 at 693.871 kb on + strand, within Sama_0558 at 693.945 kb on + strand, within Sama_0558 at 693.946 kb on - strand, within Sama_0558 at 693.989 kb on - strand, within Sama_0558 at 693.994 kb on + strand, within Sama_0558 at 693.995 kb on - strand, within Sama_0558 at 694.006 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.012 kb on + strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.013 kb on - strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.030 kb on + strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.031 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.091 kb on - strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.132 kb on + strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.133 kb on - strand, within Sama_0558 at 694.217 kb on + strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.218 kb on - strand, within Sama_0558 at 694.233 kb on + strand, within Sama_0558 at 694.234 kb on - strand, within Sama_0558 at 694.252 kb on + strand, within Sama_0558 at 694.253 kb on - strand, within Sama_0558 at 694.368 kb on - strand at 694.403 kb on - strand at 694.403 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand at 694.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric remove 692,053 + Sama_0556 0.87 +0.4 692,053 + Sama_0556 0.87 +0.5 692,053 + Sama_0556 0.87 +0.2 692,053 + Sama_0556 0.87 -0.6 692,054 - Sama_0556 0.87 +0.5 692,070 - Sama_0556 0.87 -0.1 692,124 + Sama_0556 0.89 -1.1 692,125 - Sama_0556 0.89 +0.9 692,125 - Sama_0556 0.89 -0.7 692,125 - Sama_0556 0.89 -1.6 692,125 - Sama_0556 0.89 +1.3 692,125 - Sama_0556 0.89 -0.5 692,142 + Sama_0556 0.89 +2.2 692,142 + Sama_0556 0.89 -0.8 692,143 - Sama_0556 0.89 -1.9 692,179 + +0.5 692,179 + -0.1 692,180 - -0.1 692,180 - +1.0 692,180 - -0.1 692,180 - +0.2 692,180 - +0.8 692,180 - +0.5 692,206 + -0.4 692,207 - +0.7 692,244 - -0.5 692,256 + +0.9 692,256 + -0.4 692,256 + +1.9 692,257 - +1.1 692,257 - +0.4 692,321 + -1.3 692,321 + +2.8 692,321 + +1.6 692,322 - +2.1 692,322 - -0.5 692,322 - -0.3 692,328 + -1.1 692,328 + +1.1 692,362 - +0.1 692,363 + +1.3 692,363 + -1.1 692,363 + +1.8 692,363 + -0.4 692,363 + -0.3 692,363 + -1.3 692,364 - -0.5 692,364 - +0.8 692,364 - -0.8 692,364 - +0.1 692,364 - +0.7 692,364 - -1.0 692,364 - +0.3 692,364 - -0.5 692,364 - +0.6 692,367 + -0.6 692,367 + -0.3 692,368 - +0.8 692,382 + -1.5 692,391 + -1.3 692,463 + +1.5 692,473 - -2.1 692,473 - -0.8 692,536 - +0.2 692,547 + -0.1 692,555 + -1.6 692,555 + -0.2 692,556 - +0.9 692,566 + +0.3 692,599 + +1.7 692,599 + +0.9 692,599 + -1.5 692,599 + +1.2 692,599 + +0.1 692,599 + -0.7 692,600 - +0.1 692,620 - +0.5 692,635 - +1.7 692,656 + +0.3 692,669 + -1.3 692,669 + +1.2 692,669 + -0.8 692,670 - +1.1 692,670 - +0.0 692,697 + +1.2 692,705 + -0.3 692,705 + -1.8 692,706 - -0.7 692,706 - +1.3 692,706 - -0.4 692,706 - +0.5 692,769 + +0.7 692,769 + -0.3 692,769 + +0.7 692,796 + +0.3 692,796 + -0.2 692,822 + -0.9 692,918 + +0.3 692,918 + -0.6 692,918 + -1.8 692,926 + -1.3 692,927 - +0.9 692,931 + -1.3 692,932 - -0.5 692,932 - +2.2 692,932 - +2.1 692,932 - -0.9 692,936 - +0.2 692,936 - +1.3 693,008 + +0.2 693,008 + +0.4 693,011 + +2.5 693,011 + -0.4 693,011 + +1.2 693,012 - -0.9 693,040 + +0.6 693,040 + -1.0 693,040 + -0.5 693,040 + -0.6 693,040 + +1.4 693,040 + +2.4 693,041 - +1.1 693,041 - +0.1 693,041 - +0.2 693,041 - -0.4 693,058 + -2.0 693,059 - +0.8 693,076 + +1.2 693,076 + +1.5 693,076 + -0.3 693,076 + -0.7 693,076 + +0.2 693,076 + +0.7 693,076 + +2.2 693,076 + -2.6 693,076 + -0.1 693,076 + +0.2 693,077 - -1.1 693,077 - +0.5 693,077 - +1.2 693,077 - -0.6 693,089 + Sama_0557 0.10 +1.1 693,089 + Sama_0557 0.10 -0.3 693,089 + Sama_0557 0.10 +0.4 693,090 - Sama_0557 0.10 +1.8 693,090 - Sama_0557 0.10 -1.3 693,090 - Sama_0557 0.10 -0.8 693,090 - Sama_0557 0.10 +0.2 693,090 - Sama_0557 0.10 -0.2 693,090 - Sama_0557 0.10 +0.6 693,090 - Sama_0557 0.10 +1.2 693,090 - Sama_0557 0.10 -1.3 693,109 + Sama_0557 0.14 +0.2 693,109 + Sama_0557 0.14 -0.4 693,110 - Sama_0557 0.14 -0.1 693,110 - Sama_0557 0.14 +1.3 693,110 - Sama_0557 0.14 -0.3 693,110 - Sama_0557 0.14 -0.4 693,110 - Sama_0557 0.14 -0.6 693,123 + Sama_0557 0.17 -0.3 693,124 - Sama_0557 0.17 -0.6 693,136 + Sama_0557 0.20 +1.1 693,137 - Sama_0557 0.20 -1.3 693,243 + Sama_0557 0.41 -0.5 693,244 - Sama_0557 0.42 +0.6 693,271 - Sama_0557 0.47 +1.0 693,297 + Sama_0557 0.52 +1.0 693,372 + Sama_0557 0.68 +1.9 693,373 - Sama_0557 0.68 +2.3 693,402 + Sama_0557 0.74 +0.2 693,402 + Sama_0557 0.74 -1.3 693,402 + Sama_0557 0.74 +1.1 693,428 - Sama_0557 0.79 +0.3 693,428 - Sama_0557 0.79 +0.5 693,435 + Sama_0557 0.80 -0.5 693,435 + Sama_0557 0.80 -0.3 693,435 + Sama_0557 0.80 +0.1 693,436 - Sama_0557 0.81 -1.8 693,436 - Sama_0557 0.81 +0.1 693,436 - Sama_0557 0.81 +0.2 693,438 - Sama_0557 0.81 -2.5 693,438 - Sama_0557 0.81 +0.2 693,485 + -0.8 693,485 + +0.6 693,485 + +0.7 693,485 + +2.1 693,485 + +0.4 693,485 + +0.3 693,485 + +0.7 693,485 + -0.3 693,486 - -0.6 693,486 - +1.2 693,486 - +1.1 693,486 - +0.9 693,486 - +0.1 693,528 + +0.1 693,529 - +1.3 693,530 + +2.3 693,531 - +0.2 693,531 - +0.5 693,531 - +0.3 693,531 - +0.4 693,531 - -0.4 693,531 - +0.4 693,531 - -0.1 693,548 + -0.2 693,549 - +0.1 693,618 - -1.1 693,618 - +0.5 693,633 + -1.9 693,633 + +0.1 693,634 - +0.6 693,636 + +1.2 693,636 + -0.5 693,636 + -0.7 693,637 - +1.3 693,662 + +0.1 693,662 + -0.5 693,662 + -0.8 693,662 + -1.8 693,663 - -1.4 693,663 - +1.6 693,663 - +0.6 693,663 - +0.6 693,663 - +0.4 693,663 - -1.3 693,666 - +0.6 693,740 + Sama_0558 0.11 +1.1 693,740 + Sama_0558 0.11 +0.6 693,740 + Sama_0558 0.11 -0.1 693,740 + Sama_0558 0.11 -2.8 693,740 + Sama_0558 0.11 -1.2 693,741 - Sama_0558 0.11 -1.6 693,741 - Sama_0558 0.11 +0.3 693,741 - Sama_0558 0.11 +0.7 693,741 - Sama_0558 0.11 +0.3 693,741 - Sama_0558 0.11 -0.8 693,741 - Sama_0558 0.11 -0.8 693,741 - Sama_0558 0.11 +0.9 693,741 - Sama_0558 0.11 +0.6 693,752 - Sama_0558 0.13 +1.1 693,871 + Sama_0558 0.28 -0.9 693,945 + Sama_0558 0.38 +1.1 693,946 - Sama_0558 0.38 +0.9 693,989 - Sama_0558 0.43 -1.1 693,994 + Sama_0558 0.44 +0.6 693,995 - Sama_0558 0.44 +0.4 694,006 + Sama_0558 0.45 +0.1 694,012 + Sama_0558 0.46 +3.2 694,012 + Sama_0558 0.46 +0.2 694,012 + Sama_0558 0.46 +0.4 694,012 + Sama_0558 0.46 -0.6 694,012 + Sama_0558 0.46 +0.4 694,012 + Sama_0558 0.46 -0.1 694,012 + Sama_0558 0.46 +0.1 694,013 - Sama_0558 0.46 +0.2 694,013 - Sama_0558 0.46 -1.5 694,013 - Sama_0558 0.46 +1.1 694,013 - Sama_0558 0.46 -0.8 694,030 + Sama_0558 0.48 -0.2 694,030 + Sama_0558 0.48 -0.2 694,031 - Sama_0558 0.49 -0.7 694,031 - Sama_0558 0.49 +0.1 694,031 - Sama_0558 0.49 +0.2 694,031 - Sama_0558 0.49 +0.5 694,091 - Sama_0558 0.56 +0.0 694,091 - Sama_0558 0.56 -0.8 694,132 + Sama_0558 0.61 +0.4 694,132 + Sama_0558 0.61 +0.8 694,133 - Sama_0558 0.62 -0.5 694,133 - Sama_0558 0.62 +0.4 694,133 - Sama_0558 0.62 -2.3 694,217 + Sama_0558 0.72 -0.6 694,218 - Sama_0558 0.72 +2.1 694,218 - Sama_0558 0.72 -0.9 694,233 + Sama_0558 0.74 +0.1 694,234 - Sama_0558 0.74 -1.8 694,252 + Sama_0558 0.77 -1.3 694,253 - Sama_0558 0.77 +1.2 694,368 - +0.8 694,403 - +0.6 694,403 - -0.5 694,470 - -0.3 694,470 - -1.4 694,470 - +0.9 694,470 - +0.1
Or see this region's nucleotide sequence