Strain Fitness in Shewanella loihica PV-4 around Shew_2556
Experiment: Vancomycin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Vancomycin 0.0625 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,012,111 | + | -0.6 | |||
3,013,276 | - | Shew_2556 | 0.38 | -0.3 | |
3,013,549 | + | Shew_2556 | 0.69 | -1.4 | |
3,013,724 | + | Shew_2556 | 0.90 | -0.2 | |
3,013,743 | + | -0.2 | |||
3,013,875 | + | +0.0 | |||
3,014,203 | - | Shew_2557 | 0.27 | +1.7 | |
3,014,249 | + | Shew_2557 | 0.32 | +0.4 | |
3,014,479 | - | Shew_2557 | 0.57 | +0.3 | |
3,014,629 | + | Shew_2557 | 0.74 | -0.1 | |
3,014,702 | - | Shew_2557 | 0.82 | -0.1 | |
3,014,732 | - | Shew_2557 | 0.85 | +1.5 | |
3,014,798 | - | -0.1 |
Or see this region's nucleotide sequence