Strain Fitness in Shewanella loihica PV-4 around Shew_2186

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2184 and Shew_2185 are separated by 24 nucleotidesShew_2185 and Shew_2186 are separated by 2 nucleotidesShew_2186 and Shew_2187 are separated by 109 nucleotides Shew_2184: Shew_2184 - septum site-determining protein MinC (RefSeq), at 2,543,669 to 2,544,334 _2184 Shew_2185: Shew_2185 - septum site-determining protein MinD (RefSeq), at 2,544,359 to 2,545,168 _2185 Shew_2186: Shew_2186 - cell division topological specificity factor MinE (RefSeq), at 2,545,171 to 2,545,431 _2186 Shew_2187: Shew_2187 - ribonuclease D (RefSeq), at 2,545,541 to 2,546,647 _2187 Position (kb) 2545 2546Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2544.294 kb on - strandat 2544.398 kb on - strandat 2544.527 kb on + strand, within Shew_2185at 2544.872 kb on - strand, within Shew_2185at 2544.872 kb on - strand, within Shew_2185at 2545.066 kb on + strand, within Shew_2185at 2545.834 kb on + strand, within Shew_2187at 2546.011 kb on + strand, within Shew_2187at 2546.152 kb on + strand, within Shew_2187

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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2,544,294 - -0.5
2,544,398 - -1.7
2,544,527 + Shew_2185 0.21 -1.1
2,544,872 - Shew_2185 0.63 +1.8
2,544,872 - Shew_2185 0.63 -1.0
2,545,066 + Shew_2185 0.87 -0.8
2,545,834 + Shew_2187 0.26 -3.5
2,546,011 + Shew_2187 0.42 -0.1
2,546,152 + Shew_2187 0.55 -2.0

Or see this region's nucleotide sequence