Strain Fitness in Shewanella loihica PV-4 around Shew_1687

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1686 and Shew_1687 are separated by 328 nucleotidesShew_1687 and Shew_1688 are separated by 177 nucleotides Shew_1686: Shew_1686 - hypothetical protein (RefSeq), at 1,938,497 to 1,939,174 _1686 Shew_1687: Shew_1687 - hypothetical protein (RefSeq), at 1,939,503 to 1,940,006 _1687 Shew_1688: Shew_1688 - TonB-dependent receptor (RefSeq), at 1,940,184 to 1,942,316 _1688 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -3 -2 -1 0 1at 1938.604 kb on - strand, within Shew_1686at 1938.794 kb on - strand, within Shew_1686at 1939.323 kb on + strandat 1939.820 kb on - strand, within Shew_1687at 1940.696 kb on + strand, within Shew_1688at 1940.926 kb on - strand, within Shew_1688

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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1,938,604 - Shew_1686 0.16 +0.1
1,938,794 - Shew_1686 0.44 -0.3
1,939,323 + -0.1
1,939,820 - Shew_1687 0.63 -1.7
1,940,696 + Shew_1688 0.24 -1.3
1,940,926 - Shew_1688 0.35 -2.8

Or see this region's nucleotide sequence