Strain Fitness in Shewanella loihica PV-4 around Shew_1431

Experiment: Vancomycin 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vancomycin 0.0625 mg/ml
1,645,602	-		Shew_1429	0.89	+0.5
1,645,744	+				-0.3
1,645,744	+				+0.5
1,645,752	-				+0.4
1,645,897	-		Shew_1430	0.31	-0.2
1,646,249	+		Shew_1430	0.83	-0.0
1,646,249	+		Shew_1430	0.83	-1.4
1,646,249	+		Shew_1430	0.83	-1.5
1,646,249	+		Shew_1430	0.83	+0.3
1,646,257	-		Shew_1430	0.84	+0.1
1,646,257	-		Shew_1430	0.84	+0.3
1,646,257	-		Shew_1430	0.84	-0.1
1,646,257	-		Shew_1430	0.84	+0.2
1,646,355	-				-0.2
1,646,367	+				+0.0
1,646,375	-				+0.6
1,646,395	+				-0.5
1,646,540	+				+0.6
1,646,698	+		Shew_1431	0.36	+0.2
1,646,901	-		Shew_1431	0.81	+0.6
1,646,901	-		Shew_1431	0.81	+0.7
1,647,279	-		Shew_1432	0.38	+0.3
1,647,640	+				+1.1
1,647,759	+		Shew_1433	0.14	-1.7
1,647,834	+		Shew_1433	0.21	-3.3
1,647,847	-		Shew_1433	0.22	-2.5