Experiment: Vancomycin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0699 and Shew_0700 are separated by 306 nucleotides Shew_0700 and Shew_0701 are separated by 357 nucleotides Shew_0701 and Shew_0702 are separated by 14 nucleotides
Shew_0699: Shew_0699 - Na+/H+ antiporter (RefSeq), at 793,188 to 794,663
_0699
Shew_0700: Shew_0700 - pirin domain-containing protein (RefSeq), at 794,970 to 795,830
_0700
Shew_0701: Shew_0701 - hypothetical protein (RefSeq), at 796,188 to 796,769
_0701
Shew_0702: Shew_0702 - rhomboid family protein (RefSeq), at 796,784 to 797,866
_0702
Position (kb) 794
795
796 Strain fitness (log2 ratio) -1
0
1
2 at 793.984 kb on - strand, within Shew_0699 at 794.126 kb on - strand, within Shew_0699 at 794.328 kb on + strand, within Shew_0699 at 794.555 kb on + strand at 794.581 kb on + strand at 795.856 kb on + strand at 796.011 kb on + strand at 796.220 kb on + strand at 796.404 kb on - strand, within Shew_0701 at 796.406 kb on + strand, within Shew_0701 at 796.503 kb on - strand, within Shew_0701 at 796.505 kb on + strand, within Shew_0701 at 796.553 kb on - strand, within Shew_0701 at 796.661 kb on + strand, within Shew_0701 at 796.667 kb on + strand, within Shew_0701 at 796.668 kb on + strand, within Shew_0701 at 796.698 kb on - strand, within Shew_0701 at 796.728 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml remove 793,984 - Shew_0699 0.54 +0.5 794,126 - Shew_0699 0.64 +0.5 794,328 + Shew_0699 0.77 +0.2 794,555 + +0.5 794,581 + -0.2 795,856 + -0.4 796,011 + +0.5 796,220 + -0.1 796,404 - Shew_0701 0.37 -1.1 796,406 + Shew_0701 0.37 +0.2 796,503 - Shew_0701 0.54 +2.4 796,505 + Shew_0701 0.54 +0.2 796,553 - Shew_0701 0.63 -0.0 796,661 + Shew_0701 0.81 -0.9 796,667 + Shew_0701 0.82 -0.1 796,668 + Shew_0701 0.82 +0.5 796,698 - Shew_0701 0.88 +0.0 796,728 - +0.5
Or see this region's nucleotide sequence