Strain Fitness in Shewanella loihica PV-4 around Shew_0699

Experiment: Vancomycin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0698 and Shew_0699 are separated by 135 nucleotidesShew_0699 and Shew_0700 are separated by 306 nucleotides Shew_0698: Shew_0698 - Na+/H+ antiporter NhaC (RefSeq), at 791,670 to 793,052 _0698 Shew_0699: Shew_0699 - Na+/H+ antiporter (RefSeq), at 793,188 to 794,663 _0699 Shew_0700: Shew_0700 - pirin domain-containing protein (RefSeq), at 794,970 to 795,830 _0700 Position (kb) 793 794 795Strain fitness (log2 ratio) -1 0 1 2 3 4at 792.246 kb on + strand, within Shew_0698at 792.380 kb on + strand, within Shew_0698at 792.411 kb on - strand, within Shew_0698at 793.055 kb on - strandat 793.455 kb on + strand, within Shew_0699at 793.504 kb on - strand, within Shew_0699at 793.633 kb on + strand, within Shew_0699at 793.984 kb on - strand, within Shew_0699at 794.126 kb on - strand, within Shew_0699at 794.328 kb on + strand, within Shew_0699at 794.555 kb on + strandat 794.581 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml
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792,246 + Shew_0698 0.42 +1.0
792,380 + Shew_0698 0.51 +1.0
792,411 - Shew_0698 0.54 +3.8
793,055 - +0.4
793,455 + Shew_0699 0.18 +1.5
793,504 - Shew_0699 0.21 -0.0
793,633 + Shew_0699 0.30 +0.6
793,984 - Shew_0699 0.54 +0.5
794,126 - Shew_0699 0.64 +0.5
794,328 + Shew_0699 0.77 +0.2
794,555 + +0.5
794,581 + -0.2

Or see this region's nucleotide sequence