Experiment: Vancomycin 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0271 and Shew_0272 are separated by 52 nucleotides Shew_0272 and Shew_0273 are separated by 171 nucleotides
Shew_0271: Shew_0271 - phospholipase (RefSeq), at 287,658 to 289,007
_0271
Shew_0272: Shew_0272 - cupin 2 domain-containing protein (RefSeq), at 289,060 to 289,803
_0272
Shew_0273: Shew_0273 - hypothetical protein (RefSeq), at 289,975 to 291,039
_0273
Position (kb) 289
290 Strain fitness (log2 ratio) -1
0
1 at 288.093 kb on - strand, within Shew_0271 at 288.093 kb on - strand, within Shew_0271 at 288.093 kb on - strand, within Shew_0271 at 288.098 kb on - strand, within Shew_0271 at 288.167 kb on - strand, within Shew_0271 at 288.502 kb on + strand, within Shew_0271 at 288.510 kb on - strand, within Shew_0271 at 288.510 kb on - strand, within Shew_0271 at 288.510 kb on - strand, within Shew_0271 at 288.778 kb on - strand, within Shew_0271 at 288.892 kb on - strand at 288.946 kb on + strand at 289.103 kb on - strand at 289.135 kb on + strand, within Shew_0272 at 289.335 kb on + strand, within Shew_0272 at 289.336 kb on + strand, within Shew_0272 at 289.431 kb on + strand, within Shew_0272 at 289.644 kb on + strand, within Shew_0272 at 290.356 kb on - strand, within Shew_0273 at 290.399 kb on - strand, within Shew_0273 at 290.507 kb on + strand, within Shew_0273 at 290.551 kb on - strand, within Shew_0273 at 290.601 kb on + strand, within Shew_0273 at 290.668 kb on + strand, within Shew_0273 at 290.696 kb on - strand, within Shew_0273 at 290.710 kb on - strand, within Shew_0273
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.0625 mg/ml remove 288,093 - Shew_0271 0.32 +0.8 288,093 - Shew_0271 0.32 -0.0 288,093 - Shew_0271 0.32 +0.0 288,098 - Shew_0271 0.33 +0.0 288,167 - Shew_0271 0.38 +0.0 288,502 + Shew_0271 0.63 -1.5 288,510 - Shew_0271 0.63 +0.3 288,510 - Shew_0271 0.63 +0.1 288,510 - Shew_0271 0.63 -0.2 288,778 - Shew_0271 0.83 -1.3 288,892 - -0.3 288,946 + +0.6 289,103 - -0.3 289,135 + Shew_0272 0.10 -0.2 289,335 + Shew_0272 0.37 -0.9 289,336 + Shew_0272 0.37 -0.1 289,431 + Shew_0272 0.50 +0.5 289,644 + Shew_0272 0.78 -1.1 290,356 - Shew_0273 0.36 +0.1 290,399 - Shew_0273 0.40 +0.1 290,507 + Shew_0273 0.50 +0.7 290,551 - Shew_0273 0.54 +0.6 290,601 + Shew_0273 0.59 +0.4 290,668 + Shew_0273 0.65 +0.7 290,696 - Shew_0273 0.68 -0.3 290,710 - Shew_0273 0.69 +0.3
Or see this region's nucleotide sequence