Strain Fitness in Shewanella oneidensis MR-1 around SO0472.1

Experiment: copper (II) chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0472 and SO0472.1 are separated by 96 nucleotidesSO0472.1 and SO0474 are separated by 73 nucleotidesSO0474 and SO0476 are separated by 245 nucleotides SO0472: SO0472 - membrane protein, putative (NCBI ptt file), at 496,714 to 497,835 SO0472 SO0472.1: SO0472.1 - hypothetical mitomycin resistance protein (NCBI ptt file), at 497,932 to 498,126 SO0472.1 SO0474: SO0474 - conserved hypothetical protein (NCBI ptt file), at 498,200 to 498,778 SO0474 SO0476: SO0476 - thioredoxin, putative (NCBI ptt file), at 499,024 to 499,608 SO0476 Position (kb) 497 498 499Strain fitness (log2 ratio) -2 -1 0 1at 497.002 kb on - strand, within SO0472at 497.003 kb on + strand, within SO0472at 497.118 kb on + strand, within SO0472at 497.197 kb on - strand, within SO0472at 497.215 kb on - strand, within SO0472at 497.345 kb on + strand, within SO0472at 497.353 kb on - strand, within SO0472at 497.492 kb on + strand, within SO0472at 497.498 kb on + strand, within SO0472at 497.567 kb on + strand, within SO0472at 497.567 kb on + strand, within SO0472at 497.567 kb on + strand, within SO0472at 497.567 kb on + strand, within SO0472at 497.567 kb on + strand, within SO0472at 497.567 kb on + strand, within SO0472at 497.567 kb on + strand, within SO0472at 497.567 kb on + strand, within SO0472at 497.575 kb on - strand, within SO0472at 497.575 kb on - strand, within SO0472at 497.575 kb on - strand, within SO0472at 497.575 kb on - strand, within SO0472at 497.594 kb on + strand, within SO0472at 497.600 kb on + strand, within SO0472at 497.600 kb on + strand, within SO0472at 497.608 kb on - strand, within SO0472at 497.608 kb on - strand, within SO0472at 497.608 kb on - strand, within SO0472at 497.608 kb on - strand, within SO0472at 497.608 kb on - strand, within SO0472at 497.667 kb on + strand, within SO0472at 497.818 kb on - strandat 497.818 kb on - strandat 497.830 kb on + strandat 497.857 kb on - strandat 497.886 kb on + strandat 497.894 kb on - strandat 497.901 kb on + strandat 497.910 kb on - strandat 497.928 kb on - strandat 497.955 kb on - strand, within SO0472.1at 497.993 kb on + strand, within SO0472.1at 497.993 kb on + strand, within SO0472.1at 498.114 kb on - strandat 498.244 kb on - strandat 498.428 kb on + strand, within SO0474at 498.464 kb on + strand, within SO0474at 498.534 kb on + strand, within SO0474at 498.587 kb on + strand, within SO0474at 498.631 kb on + strand, within SO0474at 498.648 kb on + strand, within SO0474at 498.757 kb on + strandat 498.844 kb on - strandat 498.944 kb on + strandat 498.944 kb on + strandat 498.944 kb on + strandat 498.952 kb on - strandat 499.021 kb on + strandat 499.029 kb on - strandat 499.064 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 0.32 mM
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497,002 - SO0472 0.26 -0.1
497,003 + SO0472 0.26 +0.4
497,118 + SO0472 0.36 -0.2
497,197 - SO0472 0.43 -0.6
497,215 - SO0472 0.45 -0.0
497,345 + SO0472 0.56 +0.1
497,353 - SO0472 0.57 +0.1
497,492 + SO0472 0.69 -0.2
497,498 + SO0472 0.70 +0.2
497,567 + SO0472 0.76 +0.4
497,567 + SO0472 0.76 +0.1
497,567 + SO0472 0.76 +0.2
497,567 + SO0472 0.76 -0.1
497,567 + SO0472 0.76 -0.5
497,567 + SO0472 0.76 +0.3
497,567 + SO0472 0.76 -0.0
497,567 + SO0472 0.76 +0.6
497,575 - SO0472 0.77 -0.3
497,575 - SO0472 0.77 +0.4
497,575 - SO0472 0.77 +0.2
497,575 - SO0472 0.77 +0.2
497,594 + SO0472 0.78 +0.3
497,600 + SO0472 0.79 +0.1
497,600 + SO0472 0.79 -0.7
497,608 - SO0472 0.80 +0.7
497,608 - SO0472 0.80 -0.3
497,608 - SO0472 0.80 -0.0
497,608 - SO0472 0.80 -0.6
497,608 - SO0472 0.80 -0.3
497,667 + SO0472 0.85 -0.1
497,818 - -0.0
497,818 - -0.4
497,830 + -0.1
497,857 - +0.7
497,886 + +0.2
497,894 - +0.7
497,901 + -1.9
497,910 - -0.0
497,928 - +0.4
497,955 - SO0472.1 0.12 -1.4
497,993 + SO0472.1 0.31 -0.2
497,993 + SO0472.1 0.31 -0.8
498,114 - +0.3
498,244 - +0.2
498,428 + SO0474 0.39 +0.0
498,464 + SO0474 0.46 +1.2
498,534 + SO0474 0.58 -0.6
498,587 + SO0474 0.67 +0.4
498,631 + SO0474 0.74 +0.2
498,648 + SO0474 0.77 -0.7
498,757 + +0.5
498,844 - -0.2
498,944 + -0.1
498,944 + -0.2
498,944 + -0.5
498,952 - -0.7
499,021 + +0.0
499,029 - +1.0
499,064 - -0.3

Or see this region's nucleotide sequence