Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3285

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3284 and Dshi_3285 overlap by 4 nucleotidesDshi_3285 and Dshi_3286 are separated by 15 nucleotidesDshi_3286 and Dshi_3287 are separated by 58 nucleotides Dshi_3284: Dshi_3284 - molybdopterin-guanine dinucleotide biosynthesis protein B (RefSeq), at 3,450,303 to 3,452,075 _3284 Dshi_3285: Dshi_3285 - Thioredoxin domain (RefSeq), at 3,452,072 to 3,452,488 _3285 Dshi_3286: Dshi_3286 - cytochrome c biogenesis protein transmembrane region (RefSeq), at 3,452,504 to 3,453,217 _3286 Dshi_3287: Dshi_3287 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,453,276 to 3,454,142 _3287 Position (kb) 3452 3453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3451.280 kb on + strand, within Dshi_3284at 3451.385 kb on - strand, within Dshi_3284at 3451.432 kb on - strand, within Dshi_3284at 3451.492 kb on - strand, within Dshi_3284at 3451.632 kb on + strand, within Dshi_3284at 3451.812 kb on - strand, within Dshi_3284at 3451.899 kb on - strandat 3451.910 kb on + strandat 3451.973 kb on + strandat 3451.976 kb on - strandat 3452.048 kb on + strandat 3452.061 kb on - strandat 3452.232 kb on - strand, within Dshi_3285at 3452.312 kb on - strand, within Dshi_3285at 3452.314 kb on + strand, within Dshi_3285at 3452.392 kb on + strand, within Dshi_3285at 3452.400 kb on + strand, within Dshi_3285at 3452.406 kb on - strand, within Dshi_3285at 3452.491 kb on - strandat 3452.543 kb on + strandat 3452.585 kb on + strand, within Dshi_3286at 3452.600 kb on - strand, within Dshi_3286at 3452.654 kb on - strand, within Dshi_3286at 3452.691 kb on + strand, within Dshi_3286at 3452.740 kb on + strand, within Dshi_3286at 3452.798 kb on + strand, within Dshi_3286at 3452.817 kb on - strand, within Dshi_3286at 3452.830 kb on - strand, within Dshi_3286at 3453.005 kb on + strand, within Dshi_3286at 3453.033 kb on - strand, within Dshi_3286at 3453.224 kb on + strandat 3453.232 kb on - strandat 3453.291 kb on - strandat 3453.342 kb on - strandat 3453.488 kb on + strand, within Dshi_3287

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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3,451,280 + Dshi_3284 0.55 -1.9
3,451,385 - Dshi_3284 0.61 +3.6
3,451,432 - Dshi_3284 0.64 -3.3
3,451,492 - Dshi_3284 0.67 +2.6
3,451,632 + Dshi_3284 0.75 -1.3
3,451,812 - Dshi_3284 0.85 +1.9
3,451,899 - -0.7
3,451,910 + -2.9
3,451,973 + +0.3
3,451,976 - -1.3
3,452,048 + -3.2
3,452,061 - -0.7
3,452,232 - Dshi_3285 0.38 -2.3
3,452,312 - Dshi_3285 0.58 -3.3
3,452,314 + Dshi_3285 0.58 -2.9
3,452,392 + Dshi_3285 0.77 +0.3
3,452,400 + Dshi_3285 0.79 -2.0
3,452,406 - Dshi_3285 0.80 -0.7
3,452,491 - -1.2
3,452,543 + +2.3
3,452,585 + Dshi_3286 0.11 +0.3
3,452,600 - Dshi_3286 0.13 +0.3
3,452,654 - Dshi_3286 0.21 -2.7
3,452,691 + Dshi_3286 0.26 +1.9
3,452,740 + Dshi_3286 0.33 +1.6
3,452,798 + Dshi_3286 0.41 -0.6
3,452,817 - Dshi_3286 0.44 +0.9
3,452,830 - Dshi_3286 0.46 +1.9
3,453,005 + Dshi_3286 0.70 -2.8
3,453,033 - Dshi_3286 0.74 -0.3
3,453,224 + -0.8
3,453,232 - -0.9
3,453,291 - -0.9
3,453,342 - -0.7
3,453,488 + Dshi_3287 0.24 -1.6

Or see this region's nucleotide sequence