Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3056

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3054 and Dshi_3055 overlap by 1 nucleotidesDshi_3055 and Dshi_3056 overlap by 4 nucleotidesDshi_3056 and Dshi_3057 are separated by 164 nucleotides Dshi_3054: Dshi_3054 - phospholipid/glycerol acyltransferase (RefSeq), at 3,222,427 to 3,223,182 _3054 Dshi_3055: Dshi_3055 - protein of unknown function DUF214 (RefSeq), at 3,223,182 to 3,224,075 _3055 Dshi_3056: Dshi_3056 - ABC transporter related (RefSeq), at 3,224,072 to 3,224,743 _3056 Dshi_3057: Dshi_3057 - MJ0042 family finger-like protein (RefSeq), at 3,224,908 to 3,225,654 _3057 Position (kb) 3224 3225Strain fitness (log2 ratio) -3 -2 -1 0 1at 3223.378 kb on + strand, within Dshi_3055at 3223.677 kb on - strand, within Dshi_3055at 3223.834 kb on + strand, within Dshi_3055at 3224.017 kb on + strandat 3224.077 kb on + strandat 3224.281 kb on + strand, within Dshi_3056at 3224.438 kb on - strand, within Dshi_3056at 3224.724 kb on + strandat 3224.746 kb on - strandat 3224.754 kb on - strandat 3224.836 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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3,223,378 + Dshi_3055 0.22 -2.5
3,223,677 - Dshi_3055 0.55 +0.5
3,223,834 + Dshi_3055 0.73 +0.5
3,224,017 + -1.1
3,224,077 + +0.5
3,224,281 + Dshi_3056 0.31 -1.1
3,224,438 - Dshi_3056 0.54 -3.2
3,224,724 + +0.5
3,224,746 - +0.5
3,224,754 - -0.5
3,224,836 + +1.5

Or see this region's nucleotide sequence