Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3034

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3033 and Dshi_3034 are separated by 103 nucleotidesDshi_3034 and Dshi_3035 are separated by 18 nucleotidesDshi_3035 and Dshi_3036 are separated by 102 nucleotides Dshi_3033: Dshi_3033 - Fmu (Sun) domain protein (RefSeq), at 3,201,216 to 3,202,547 _3033 Dshi_3034: Dshi_3034 - protein of unknown function DUF1674 (RefSeq), at 3,202,651 to 3,202,875 _3034 Dshi_3035: Dshi_3035 - hypothetical protein (RefSeq), at 3,202,894 to 3,203,289 _3035 Dshi_3036: Dshi_3036 - acriflavin resistance protein (RefSeq), at 3,203,392 to 3,206,619 _3036 Position (kb) 3202 3203Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3201.655 kb on + strand, within Dshi_3033at 3201.655 kb on + strand, within Dshi_3033at 3201.693 kb on - strand, within Dshi_3033at 3201.782 kb on + strand, within Dshi_3033at 3201.782 kb on + strand, within Dshi_3033at 3201.816 kb on - strand, within Dshi_3033at 3201.844 kb on - strand, within Dshi_3033at 3202.085 kb on - strand, within Dshi_3033at 3202.170 kb on + strand, within Dshi_3033at 3202.175 kb on + strand, within Dshi_3033at 3202.188 kb on - strand, within Dshi_3033at 3202.296 kb on - strand, within Dshi_3033at 3202.527 kb on + strandat 3202.592 kb on + strandat 3202.600 kb on - strandat 3202.699 kb on - strand, within Dshi_3034at 3202.712 kb on + strand, within Dshi_3034at 3202.883 kb on + strandat 3202.932 kb on + strandat 3202.937 kb on + strand, within Dshi_3035at 3203.003 kb on + strand, within Dshi_3035at 3203.011 kb on - strand, within Dshi_3035at 3203.065 kb on + strand, within Dshi_3035at 3203.068 kb on - strand, within Dshi_3035at 3203.073 kb on - strand, within Dshi_3035at 3203.096 kb on + strand, within Dshi_3035at 3203.096 kb on - strand, within Dshi_3035at 3203.104 kb on - strand, within Dshi_3035at 3203.111 kb on - strand, within Dshi_3035at 3203.196 kb on - strand, within Dshi_3035at 3203.228 kb on - strand, within Dshi_3035at 3203.266 kb on + strandat 3203.302 kb on + strandat 3203.313 kb on - strandat 3203.339 kb on - strandat 3203.429 kb on + strandat 3203.583 kb on + strandat 3203.600 kb on + strandat 3203.629 kb on - strandat 3203.704 kb on - strandat 3203.783 kb on + strand, within Dshi_3036

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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3,201,655 + Dshi_3033 0.33 +0.5
3,201,655 + Dshi_3033 0.33 +0.5
3,201,693 - Dshi_3033 0.36 -0.5
3,201,782 + Dshi_3033 0.42 +0.5
3,201,782 + Dshi_3033 0.42 -0.5
3,201,816 - Dshi_3033 0.45 -2.2
3,201,844 - Dshi_3033 0.47 +0.5
3,202,085 - Dshi_3033 0.65 +0.5
3,202,170 + Dshi_3033 0.72 -0.3
3,202,175 + Dshi_3033 0.72 -1.1
3,202,188 - Dshi_3033 0.73 -1.1
3,202,296 - Dshi_3033 0.81 +0.5
3,202,527 + +2.1
3,202,592 + -0.6
3,202,600 - -2.8
3,202,699 - Dshi_3034 0.21 +0.5
3,202,712 + Dshi_3034 0.27 -0.9
3,202,883 + -0.8
3,202,932 + -2.7
3,202,937 + Dshi_3035 0.11 -0.5
3,203,003 + Dshi_3035 0.28 -2.5
3,203,011 - Dshi_3035 0.30 -0.7
3,203,065 + Dshi_3035 0.43 +0.5
3,203,068 - Dshi_3035 0.44 +0.2
3,203,073 - Dshi_3035 0.45 +0.5
3,203,096 + Dshi_3035 0.51 -2.1
3,203,096 - Dshi_3035 0.51 -0.0
3,203,104 - Dshi_3035 0.53 -0.7
3,203,111 - Dshi_3035 0.55 -1.4
3,203,196 - Dshi_3035 0.76 +0.8
3,203,228 - Dshi_3035 0.84 +1.2
3,203,266 + -0.0
3,203,302 + +2.1
3,203,313 - -1.7
3,203,339 - +0.8
3,203,429 + -1.4
3,203,583 + -1.6
3,203,600 + -2.1
3,203,629 - -2.0
3,203,704 - +3.1
3,203,783 + Dshi_3036 0.12 -0.2

Or see this region's nucleotide sequence