Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3031

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3029 and Dshi_3030 are separated by 63 nucleotidesDshi_3030 and Dshi_3031 are separated by 3 nucleotidesDshi_3031 and Dshi_3032 are separated by 342 nucleotides Dshi_3029: Dshi_3029 - H+transporting two-sector ATPase C subunit (RefSeq), at 3,197,716 to 3,197,940 _3029 Dshi_3030: Dshi_3030 - ATP synthase F0, A subunit (RefSeq), at 3,198,004 to 3,198,750 _3030 Dshi_3031: Dshi_3031 - ATP synthase F0, subunit I (RefSeq), at 3,198,754 to 3,199,086 _3031 Dshi_3032: Dshi_3032 - Heparinase II/III family protein (RefSeq), at 3,199,429 to 3,201,147 _3032 Position (kb) 3198 3199 3200Strain fitness (log2 ratio) -1 0 1 2at 3199.310 kb on + strandat 3199.318 kb on - strandat 3199.318 kb on - strandat 3199.318 kb on - strandat 3199.399 kb on - strandat 3199.448 kb on + strandat 3199.506 kb on - strandat 3199.684 kb on - strand, within Dshi_3032at 3199.736 kb on - strand, within Dshi_3032at 3199.821 kb on - strand, within Dshi_3032

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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3,199,310 + -0.5
3,199,318 - +1.5
3,199,318 - -0.2
3,199,318 - +0.7
3,199,399 - -0.5
3,199,448 + +2.1
3,199,506 - -0.4
3,199,684 - Dshi_3032 0.15 +0.2
3,199,736 - Dshi_3032 0.18 +0.5
3,199,821 - Dshi_3032 0.23 +0.5

Or see this region's nucleotide sequence