Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2919

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2917 and Dshi_2918 are separated by 28 nucleotidesDshi_2918 and Dshi_2919 are separated by 169 nucleotidesDshi_2919 and Dshi_2920 are separated by 43 nucleotidesDshi_2920 and Dshi_2921 are separated by 376 nucleotides Dshi_2917: Dshi_2917 - amidohydrolase (RefSeq), at 3,075,327 to 3,076,484 _2917 Dshi_2918: Dshi_2918 - GCN5-related N-acetyltransferase (RefSeq), at 3,076,513 to 3,077,004 _2918 Dshi_2919: Dshi_2919 - chaperonin GroEL (RefSeq), at 3,077,174 to 3,078,817 _2919 Dshi_2920: Dshi_2920 - chaperonin Cpn10 (RefSeq), at 3,078,861 to 3,079,172 _2920 Dshi_2921: Dshi_2921 - hypothetical protein (RefSeq), at 3,079,549 to 3,080,532 _2921 Position (kb) 3077 3078 3079Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3076.188 kb on - strand, within Dshi_2917at 3076.283 kb on + strand, within Dshi_2917at 3076.729 kb on + strand, within Dshi_2918at 3076.866 kb on + strand, within Dshi_2918at 3076.874 kb on - strand, within Dshi_2918at 3077.045 kb on - strandat 3079.370 kb on + strandat 3079.381 kb on + strandat 3079.386 kb on + strandat 3079.392 kb on + strandat 3079.405 kb on - strandat 3079.405 kb on - strandat 3079.405 kb on - strandat 3079.414 kb on + strandat 3079.422 kb on - strandat 3079.565 kb on + strandat 3079.565 kb on + strandat 3079.565 kb on + strandat 3079.565 kb on + strandat 3079.565 kb on + strandat 3079.565 kb on + strandat 3079.565 kb on + strandat 3079.565 kb on + strandat 3079.573 kb on - strandat 3079.573 kb on - strandat 3079.573 kb on - strandat 3079.573 kb on - strandat 3079.573 kb on - strandat 3079.573 kb on - strandat 3079.573 kb on - strandat 3079.573 kb on - strandat 3079.575 kb on + strandat 3079.665 kb on + strand, within Dshi_2921at 3079.679 kb on + strand, within Dshi_2921at 3079.720 kb on + strand, within Dshi_2921at 3079.726 kb on - strand, within Dshi_2921at 3079.740 kb on + strand, within Dshi_2921at 3079.747 kb on - strand, within Dshi_2921at 3079.747 kb on - strand, within Dshi_2921at 3079.747 kb on - strand, within Dshi_2921at 3079.751 kb on + strand, within Dshi_2921at 3079.754 kb on - strand, within Dshi_2921at 3079.754 kb on - strand, within Dshi_2921at 3079.774 kb on + strand, within Dshi_2921at 3079.799 kb on + strand, within Dshi_2921

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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3,076,188 - Dshi_2917 0.74 -3.3
3,076,283 + Dshi_2917 0.83 -0.8
3,076,729 + Dshi_2918 0.44 +0.5
3,076,866 + Dshi_2918 0.72 +1.5
3,076,874 - Dshi_2918 0.73 -1.1
3,077,045 - -0.5
3,079,370 + +0.5
3,079,381 + -1.1
3,079,386 + -2.8
3,079,392 + +0.5
3,079,405 - +1.5
3,079,405 - +2.8
3,079,405 - +0.5
3,079,414 + +2.1
3,079,422 - -0.6
3,079,565 + -0.5
3,079,565 + -1.2
3,079,565 + +1.5
3,079,565 + -0.8
3,079,565 + -1.8
3,079,565 + -0.5
3,079,565 + -3.1
3,079,565 + +0.7
3,079,573 - +0.1
3,079,573 - +0.5
3,079,573 - -2.6
3,079,573 - -0.7
3,079,573 - +0.5
3,079,573 - +0.5
3,079,573 - -0.1
3,079,573 - -0.7
3,079,575 + -2.5
3,079,665 + Dshi_2921 0.12 +2.5
3,079,679 + Dshi_2921 0.13 +0.9
3,079,720 + Dshi_2921 0.17 -1.2
3,079,726 - Dshi_2921 0.18 +2.5
3,079,740 + Dshi_2921 0.19 -2.5
3,079,747 - Dshi_2921 0.20 -0.5
3,079,747 - Dshi_2921 0.20 -0.6
3,079,747 - Dshi_2921 0.20 -1.3
3,079,751 + Dshi_2921 0.21 +0.5
3,079,754 - Dshi_2921 0.21 +0.3
3,079,754 - Dshi_2921 0.21 -1.9
3,079,774 + Dshi_2921 0.23 -2.8
3,079,799 + Dshi_2921 0.25 +0.5

Or see this region's nucleotide sequence