Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2886 and Dshi_2887 are separated by 94 nucleotides Dshi_2887 and Dshi_2888 are separated by 74 nucleotides Dshi_2888 and Dshi_2889 overlap by 4 nucleotides
Dshi_2886: Dshi_2886 - dihydrolipoamide dehydrogenase (RefSeq), at 3,041,719 to 3,043,113
_2886
Dshi_2887: Dshi_2887 - succinic semialdehyde dehydrogenase (RefSeq), at 3,043,208 to 3,044,686
_2887
Dshi_2888: Dshi_2888 - putative esterase/lipase/thioesterase (RefSeq), at 3,044,761 to 3,045,534
_2888
Dshi_2889: Dshi_2889 - peptidase S58 DmpA (RefSeq), at 3,045,531 to 3,046,514
_2889
Position (kb)
3043
3044
3045 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3043.166 kb on + strand at 3043.166 kb on + strand at 3043.166 kb on + strand at 3043.174 kb on - strand at 3043.286 kb on - strand at 3043.370 kb on - strand, within Dshi_2887 at 3043.581 kb on - strand, within Dshi_2887 at 3043.621 kb on + strand, within Dshi_2887 at 3043.684 kb on - strand, within Dshi_2887 at 3043.712 kb on - strand, within Dshi_2887 at 3043.793 kb on + strand, within Dshi_2887 at 3043.796 kb on - strand, within Dshi_2887 at 3043.944 kb on - strand, within Dshi_2887 at 3043.949 kb on - strand, within Dshi_2887 at 3043.981 kb on + strand, within Dshi_2887 at 3043.991 kb on - strand, within Dshi_2887 at 3044.075 kb on - strand, within Dshi_2887 at 3044.277 kb on + strand, within Dshi_2887 at 3044.401 kb on - strand, within Dshi_2887 at 3044.721 kb on + strand at 3044.896 kb on - strand, within Dshi_2888 at 3045.000 kb on - strand, within Dshi_2888 at 3045.027 kb on + strand, within Dshi_2888 at 3045.070 kb on - strand, within Dshi_2888 at 3045.296 kb on + strand, within Dshi_2888 at 3045.296 kb on - strand, within Dshi_2888 at 3045.383 kb on - strand, within Dshi_2888 at 3045.388 kb on - strand, within Dshi_2888 at 3045.424 kb on + strand, within Dshi_2888 at 3045.429 kb on + strand, within Dshi_2888 at 3045.437 kb on - strand, within Dshi_2888 at 3045.556 kb on + strand at 3045.673 kb on - strand, within Dshi_2889
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 3,043,166 + +0.1 3,043,166 + -2.5 3,043,166 + +1.5 3,043,174 - -0.6 3,043,286 - -2.5 3,043,370 - Dshi_2887 0.11 -0.8 3,043,581 - Dshi_2887 0.25 -0.8 3,043,621 + Dshi_2887 0.28 -1.2 3,043,684 - Dshi_2887 0.32 +0.5 3,043,712 - Dshi_2887 0.34 -1.0 3,043,793 + Dshi_2887 0.40 -4.1 3,043,796 - Dshi_2887 0.40 +0.9 3,043,944 - Dshi_2887 0.50 -0.8 3,043,949 - Dshi_2887 0.50 -0.9 3,043,981 + Dshi_2887 0.52 -0.7 3,043,991 - Dshi_2887 0.53 -1.5 3,044,075 - Dshi_2887 0.59 -0.7 3,044,277 + Dshi_2887 0.72 +0.5 3,044,401 - Dshi_2887 0.81 +0.9 3,044,721 + +0.9 3,044,896 - Dshi_2888 0.17 -1.1 3,045,000 - Dshi_2888 0.31 +0.5 3,045,027 + Dshi_2888 0.34 +3.3 3,045,070 - Dshi_2888 0.40 -2.8 3,045,296 + Dshi_2888 0.69 -0.2 3,045,296 - Dshi_2888 0.69 -2.7 3,045,383 - Dshi_2888 0.80 -0.7 3,045,388 - Dshi_2888 0.81 +0.5 3,045,424 + Dshi_2888 0.86 +0.2 3,045,429 + Dshi_2888 0.86 -0.1 3,045,437 - Dshi_2888 0.87 -2.1 3,045,556 + +1.3 3,045,673 - Dshi_2889 0.14 -0.1
Or see this region's nucleotide sequence