Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2887

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2886 and Dshi_2887 are separated by 94 nucleotidesDshi_2887 and Dshi_2888 are separated by 74 nucleotidesDshi_2888 and Dshi_2889 overlap by 4 nucleotides Dshi_2886: Dshi_2886 - dihydrolipoamide dehydrogenase (RefSeq), at 3,041,719 to 3,043,113 _2886 Dshi_2887: Dshi_2887 - succinic semialdehyde dehydrogenase (RefSeq), at 3,043,208 to 3,044,686 _2887 Dshi_2888: Dshi_2888 - putative esterase/lipase/thioesterase (RefSeq), at 3,044,761 to 3,045,534 _2888 Dshi_2889: Dshi_2889 - peptidase S58 DmpA (RefSeq), at 3,045,531 to 3,046,514 _2889 Position (kb) 3043 3044 3045Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3043.166 kb on + strandat 3043.166 kb on + strandat 3043.166 kb on + strandat 3043.174 kb on - strandat 3043.286 kb on - strandat 3043.370 kb on - strand, within Dshi_2887at 3043.581 kb on - strand, within Dshi_2887at 3043.621 kb on + strand, within Dshi_2887at 3043.684 kb on - strand, within Dshi_2887at 3043.712 kb on - strand, within Dshi_2887at 3043.793 kb on + strand, within Dshi_2887at 3043.796 kb on - strand, within Dshi_2887at 3043.944 kb on - strand, within Dshi_2887at 3043.949 kb on - strand, within Dshi_2887at 3043.981 kb on + strand, within Dshi_2887at 3043.991 kb on - strand, within Dshi_2887at 3044.075 kb on - strand, within Dshi_2887at 3044.277 kb on + strand, within Dshi_2887at 3044.401 kb on - strand, within Dshi_2887at 3044.721 kb on + strandat 3044.896 kb on - strand, within Dshi_2888at 3045.000 kb on - strand, within Dshi_2888at 3045.027 kb on + strand, within Dshi_2888at 3045.070 kb on - strand, within Dshi_2888at 3045.296 kb on + strand, within Dshi_2888at 3045.296 kb on - strand, within Dshi_2888at 3045.383 kb on - strand, within Dshi_2888at 3045.388 kb on - strand, within Dshi_2888at 3045.424 kb on + strand, within Dshi_2888at 3045.429 kb on + strand, within Dshi_2888at 3045.437 kb on - strand, within Dshi_2888at 3045.556 kb on + strandat 3045.673 kb on - strand, within Dshi_2889

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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3,043,166 + +0.1
3,043,166 + -2.5
3,043,166 + +1.5
3,043,174 - -0.6
3,043,286 - -2.5
3,043,370 - Dshi_2887 0.11 -0.8
3,043,581 - Dshi_2887 0.25 -0.8
3,043,621 + Dshi_2887 0.28 -1.2
3,043,684 - Dshi_2887 0.32 +0.5
3,043,712 - Dshi_2887 0.34 -1.0
3,043,793 + Dshi_2887 0.40 -4.1
3,043,796 - Dshi_2887 0.40 +0.9
3,043,944 - Dshi_2887 0.50 -0.8
3,043,949 - Dshi_2887 0.50 -0.9
3,043,981 + Dshi_2887 0.52 -0.7
3,043,991 - Dshi_2887 0.53 -1.5
3,044,075 - Dshi_2887 0.59 -0.7
3,044,277 + Dshi_2887 0.72 +0.5
3,044,401 - Dshi_2887 0.81 +0.9
3,044,721 + +0.9
3,044,896 - Dshi_2888 0.17 -1.1
3,045,000 - Dshi_2888 0.31 +0.5
3,045,027 + Dshi_2888 0.34 +3.3
3,045,070 - Dshi_2888 0.40 -2.8
3,045,296 + Dshi_2888 0.69 -0.2
3,045,296 - Dshi_2888 0.69 -2.7
3,045,383 - Dshi_2888 0.80 -0.7
3,045,388 - Dshi_2888 0.81 +0.5
3,045,424 + Dshi_2888 0.86 +0.2
3,045,429 + Dshi_2888 0.86 -0.1
3,045,437 - Dshi_2888 0.87 -2.1
3,045,556 + +1.3
3,045,673 - Dshi_2889 0.14 -0.1

Or see this region's nucleotide sequence