Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2804 and Dshi_2805 are separated by 49 nucleotides Dshi_2805 and Dshi_2806 are separated by 18 nucleotides Dshi_2806 and Dshi_2807 are separated by 35 nucleotides Dshi_2807 and Dshi_2808 are separated by 116 nucleotides
Dshi_2804: Dshi_2804 - diheme cytochrome c SoxA (RefSeq), at 2,963,655 to 2,964,509
_2804
Dshi_2805: Dshi_2805 - Sulphur oxidation protein SoxZ (RefSeq), at 2,964,559 to 2,964,888
_2805
Dshi_2806: Dshi_2806 - sulfur oxidation protein SoxY (RefSeq), at 2,964,907 to 2,965,323
_2806
Dshi_2807: Dshi_2807 - monoheme cytochrome c SoxX (RefSeq), at 2,965,359 to 2,965,841
_2807
Dshi_2808: Dshi_2808 - thioredoxin SoxW (RefSeq), at 2,965,958 to 2,966,524
_2808
Position (kb)
2964
2965
2966 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2963.958 kb on - strand, within Dshi_2804 at 2964.017 kb on + strand, within Dshi_2804 at 2964.058 kb on - strand, within Dshi_2804 at 2964.060 kb on + strand, within Dshi_2804 at 2964.072 kb on + strand, within Dshi_2804 at 2964.208 kb on + strand, within Dshi_2804 at 2964.236 kb on - strand, within Dshi_2804 at 2964.240 kb on + strand, within Dshi_2804 at 2964.320 kb on - strand, within Dshi_2804 at 2964.330 kb on + strand, within Dshi_2804 at 2964.366 kb on - strand, within Dshi_2804 at 2964.429 kb on + strand at 2964.437 kb on - strand at 2964.458 kb on - strand at 2964.487 kb on + strand at 2964.557 kb on + strand at 2964.702 kb on - strand, within Dshi_2805 at 2964.769 kb on - strand, within Dshi_2805 at 2964.775 kb on + strand, within Dshi_2805 at 2964.775 kb on + strand, within Dshi_2805 at 2964.900 kb on + strand at 2964.941 kb on + strand at 2965.077 kb on + strand, within Dshi_2806 at 2965.088 kb on + strand, within Dshi_2806 at 2965.090 kb on - strand, within Dshi_2806 at 2965.095 kb on - strand, within Dshi_2806 at 2965.187 kb on - strand, within Dshi_2806 at 2965.258 kb on + strand, within Dshi_2806 at 2965.430 kb on + strand, within Dshi_2807 at 2965.476 kb on - strand, within Dshi_2807 at 2965.564 kb on + strand, within Dshi_2807 at 2965.572 kb on - strand, within Dshi_2807 at 2965.619 kb on - strand, within Dshi_2807 at 2965.664 kb on + strand, within Dshi_2807 at 2965.674 kb on + strand, within Dshi_2807 at 2965.754 kb on - strand, within Dshi_2807 at 2965.766 kb on - strand, within Dshi_2807 at 2965.845 kb on - strand at 2965.895 kb on - strand at 2966.008 kb on + strand at 2966.019 kb on + strand, within Dshi_2808 at 2966.027 kb on - strand, within Dshi_2808 at 2966.118 kb on + strand, within Dshi_2808 at 2966.143 kb on + strand, within Dshi_2808 at 2966.144 kb on + strand, within Dshi_2808 at 2966.144 kb on + strand, within Dshi_2808 at 2966.154 kb on + strand, within Dshi_2808 at 2966.200 kb on + strand, within Dshi_2808 at 2966.208 kb on - strand, within Dshi_2808
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 2,963,958 - Dshi_2804 0.35 -2.8 2,964,017 + Dshi_2804 0.42 -0.7 2,964,058 - Dshi_2804 0.47 -0.3 2,964,060 + Dshi_2804 0.47 -0.3 2,964,072 + Dshi_2804 0.49 +0.9 2,964,208 + Dshi_2804 0.65 -0.3 2,964,236 - Dshi_2804 0.68 -2.3 2,964,240 + Dshi_2804 0.68 -1.2 2,964,320 - Dshi_2804 0.78 -0.3 2,964,330 + Dshi_2804 0.79 +3.6 2,964,366 - Dshi_2804 0.83 +2.8 2,964,429 + -1.4 2,964,437 - +0.8 2,964,458 - +1.7 2,964,487 + -0.3 2,964,557 + -0.7 2,964,702 - Dshi_2805 0.43 +0.1 2,964,769 - Dshi_2805 0.64 -0.5 2,964,775 + Dshi_2805 0.65 -0.7 2,964,775 + Dshi_2805 0.65 -1.0 2,964,900 + -0.2 2,964,941 + +2.1 2,965,077 + Dshi_2806 0.41 -1.7 2,965,088 + Dshi_2806 0.43 -1.5 2,965,090 - Dshi_2806 0.44 +0.4 2,965,095 - Dshi_2806 0.45 -1.3 2,965,187 - Dshi_2806 0.67 +0.6 2,965,258 + Dshi_2806 0.84 -0.3 2,965,430 + Dshi_2807 0.15 +0.8 2,965,476 - Dshi_2807 0.24 +2.3 2,965,564 + Dshi_2807 0.42 -0.5 2,965,572 - Dshi_2807 0.44 -0.5 2,965,619 - Dshi_2807 0.54 +0.1 2,965,664 + Dshi_2807 0.63 +0.1 2,965,674 + Dshi_2807 0.65 +0.3 2,965,754 - Dshi_2807 0.82 +0.5 2,965,766 - Dshi_2807 0.84 +0.5 2,965,845 - -0.1 2,965,895 - +0.3 2,966,008 + -0.7 2,966,019 + Dshi_2808 0.11 +2.8 2,966,027 - Dshi_2808 0.12 -0.9 2,966,118 + Dshi_2808 0.28 -2.3 2,966,143 + Dshi_2808 0.33 +1.0 2,966,144 + Dshi_2808 0.33 -1.7 2,966,144 + Dshi_2808 0.33 -0.8 2,966,154 + Dshi_2808 0.35 -1.1 2,966,200 + Dshi_2808 0.43 +0.5 2,966,208 - Dshi_2808 0.44 -2.8
Or see this region's nucleotide sequence