Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2805

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2804 and Dshi_2805 are separated by 49 nucleotidesDshi_2805 and Dshi_2806 are separated by 18 nucleotidesDshi_2806 and Dshi_2807 are separated by 35 nucleotides Dshi_2804: Dshi_2804 - diheme cytochrome c SoxA (RefSeq), at 2,963,655 to 2,964,509 _2804 Dshi_2805: Dshi_2805 - Sulphur oxidation protein SoxZ (RefSeq), at 2,964,559 to 2,964,888 _2805 Dshi_2806: Dshi_2806 - sulfur oxidation protein SoxY (RefSeq), at 2,964,907 to 2,965,323 _2806 Dshi_2807: Dshi_2807 - monoheme cytochrome c SoxX (RefSeq), at 2,965,359 to 2,965,841 _2807 Position (kb) 2964 2965Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2963.559 kb on - strandat 2963.689 kb on + strandat 2963.793 kb on + strand, within Dshi_2804at 2963.796 kb on - strand, within Dshi_2804at 2963.850 kb on + strand, within Dshi_2804at 2963.884 kb on + strand, within Dshi_2804at 2963.958 kb on - strand, within Dshi_2804at 2964.017 kb on + strand, within Dshi_2804at 2964.058 kb on - strand, within Dshi_2804at 2964.060 kb on + strand, within Dshi_2804at 2964.072 kb on + strand, within Dshi_2804at 2964.208 kb on + strand, within Dshi_2804at 2964.236 kb on - strand, within Dshi_2804at 2964.240 kb on + strand, within Dshi_2804at 2964.320 kb on - strand, within Dshi_2804at 2964.330 kb on + strand, within Dshi_2804at 2964.366 kb on - strand, within Dshi_2804at 2964.429 kb on + strandat 2964.437 kb on - strandat 2964.458 kb on - strandat 2964.487 kb on + strandat 2964.557 kb on + strandat 2964.702 kb on - strand, within Dshi_2805at 2964.769 kb on - strand, within Dshi_2805at 2964.775 kb on + strand, within Dshi_2805at 2964.775 kb on + strand, within Dshi_2805at 2964.900 kb on + strandat 2964.941 kb on + strandat 2965.077 kb on + strand, within Dshi_2806at 2965.088 kb on + strand, within Dshi_2806at 2965.090 kb on - strand, within Dshi_2806at 2965.095 kb on - strand, within Dshi_2806at 2965.187 kb on - strand, within Dshi_2806at 2965.258 kb on + strand, within Dshi_2806at 2965.430 kb on + strand, within Dshi_2807at 2965.476 kb on - strand, within Dshi_2807at 2965.564 kb on + strand, within Dshi_2807at 2965.572 kb on - strand, within Dshi_2807at 2965.619 kb on - strand, within Dshi_2807at 2965.664 kb on + strand, within Dshi_2807at 2965.674 kb on + strand, within Dshi_2807at 2965.754 kb on - strand, within Dshi_2807at 2965.766 kb on - strand, within Dshi_2807at 2965.845 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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2,963,559 - -1.9
2,963,689 + +0.1
2,963,793 + Dshi_2804 0.16 -0.4
2,963,796 - Dshi_2804 0.16 +2.1
2,963,850 + Dshi_2804 0.23 +2.5
2,963,884 + Dshi_2804 0.27 -1.5
2,963,958 - Dshi_2804 0.35 -2.8
2,964,017 + Dshi_2804 0.42 -0.7
2,964,058 - Dshi_2804 0.47 -0.3
2,964,060 + Dshi_2804 0.47 -0.3
2,964,072 + Dshi_2804 0.49 +0.9
2,964,208 + Dshi_2804 0.65 -0.3
2,964,236 - Dshi_2804 0.68 -2.3
2,964,240 + Dshi_2804 0.68 -1.2
2,964,320 - Dshi_2804 0.78 -0.3
2,964,330 + Dshi_2804 0.79 +3.6
2,964,366 - Dshi_2804 0.83 +2.8
2,964,429 + -1.4
2,964,437 - +0.8
2,964,458 - +1.7
2,964,487 + -0.3
2,964,557 + -0.7
2,964,702 - Dshi_2805 0.43 +0.1
2,964,769 - Dshi_2805 0.64 -0.5
2,964,775 + Dshi_2805 0.65 -0.7
2,964,775 + Dshi_2805 0.65 -1.0
2,964,900 + -0.2
2,964,941 + +2.1
2,965,077 + Dshi_2806 0.41 -1.7
2,965,088 + Dshi_2806 0.43 -1.5
2,965,090 - Dshi_2806 0.44 +0.4
2,965,095 - Dshi_2806 0.45 -1.3
2,965,187 - Dshi_2806 0.67 +0.6
2,965,258 + Dshi_2806 0.84 -0.3
2,965,430 + Dshi_2807 0.15 +0.8
2,965,476 - Dshi_2807 0.24 +2.3
2,965,564 + Dshi_2807 0.42 -0.5
2,965,572 - Dshi_2807 0.44 -0.5
2,965,619 - Dshi_2807 0.54 +0.1
2,965,664 + Dshi_2807 0.63 +0.1
2,965,674 + Dshi_2807 0.65 +0.3
2,965,754 - Dshi_2807 0.82 +0.5
2,965,766 - Dshi_2807 0.84 +0.5
2,965,845 - -0.1

Or see this region's nucleotide sequence