Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2799

Experiment: m.b. Cobalt chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2797 and Dshi_2798 overlap by 4 nucleotidesDshi_2798 and Dshi_2799 are separated by 120 nucleotidesDshi_2799 and Dshi_2800 are separated by 33 nucleotidesDshi_2800 and Dshi_2801 are separated by 4 nucleotides Dshi_2797: Dshi_2797 - Fructokinase (EC 2.7.1.4) (from data), at 2,955,983 to 2,956,909 _2797 Dshi_2798: Dshi_2798 - D-tyrosyl-tRNA(Tyr) deacylase (RefSeq), at 2,956,906 to 2,957,343 _2798 Dshi_2799: Dshi_2799 - Flavocytochrome c sulphide dehydrogenase flavin-binding (RefSeq), at 2,957,464 to 2,958,732 _2799 Dshi_2800: Dshi_2800 - cytochrome c class I (RefSeq), at 2,958,766 to 2,959,473 _2800 Dshi_2801: Dshi_2801 - cytochrome c class I (RefSeq), at 2,959,478 to 2,960,506 _2801 Position (kb) 2957 2958 2959Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2956.555 kb on - strand, within Dshi_2797at 2956.555 kb on - strand, within Dshi_2797at 2956.573 kb on - strand, within Dshi_2797at 2956.616 kb on + strand, within Dshi_2797at 2956.725 kb on - strand, within Dshi_2797at 2956.823 kb on + strandat 2956.834 kb on - strandat 2956.856 kb on + strandat 2956.976 kb on + strand, within Dshi_2798at 2956.984 kb on - strand, within Dshi_2798at 2957.304 kb on + strandat 2957.530 kb on - strandat 2957.613 kb on + strand, within Dshi_2799at 2957.621 kb on - strand, within Dshi_2799at 2957.640 kb on - strand, within Dshi_2799at 2957.717 kb on + strand, within Dshi_2799at 2958.028 kb on + strand, within Dshi_2799at 2958.046 kb on - strand, within Dshi_2799at 2958.046 kb on - strand, within Dshi_2799at 2958.178 kb on - strand, within Dshi_2799at 2958.215 kb on + strand, within Dshi_2799at 2958.418 kb on + strand, within Dshi_2799at 2958.437 kb on - strand, within Dshi_2799at 2958.468 kb on + strand, within Dshi_2799at 2958.474 kb on + strand, within Dshi_2799at 2958.486 kb on + strand, within Dshi_2799at 2958.500 kb on + strand, within Dshi_2799at 2958.646 kb on + strandat 2958.669 kb on + strandat 2958.751 kb on + strandat 2958.814 kb on + strandat 2958.920 kb on + strand, within Dshi_2800at 2958.933 kb on - strand, within Dshi_2800at 2958.953 kb on + strand, within Dshi_2800at 2958.972 kb on + strand, within Dshi_2800at 2959.118 kb on - strand, within Dshi_2800at 2959.168 kb on - strand, within Dshi_2800at 2959.266 kb on + strand, within Dshi_2800at 2959.266 kb on + strand, within Dshi_2800at 2959.305 kb on + strand, within Dshi_2800at 2959.313 kb on - strand, within Dshi_2800at 2959.450 kb on - strandat 2959.525 kb on - strandat 2959.575 kb on + strandat 2959.653 kb on - strand, within Dshi_2801

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
remove
2,956,555 - Dshi_2797 0.62 +0.1
2,956,555 - Dshi_2797 0.62 -1.4
2,956,573 - Dshi_2797 0.64 -1.0
2,956,616 + Dshi_2797 0.68 +0.5
2,956,725 - Dshi_2797 0.80 -1.8
2,956,823 + -0.3
2,956,834 - -2.1
2,956,856 + -2.1
2,956,976 + Dshi_2798 0.16 -0.5
2,956,984 - Dshi_2798 0.18 +2.8
2,957,304 + -2.3
2,957,530 - -2.1
2,957,613 + Dshi_2799 0.12 -0.5
2,957,621 - Dshi_2799 0.12 +0.5
2,957,640 - Dshi_2799 0.14 -0.5
2,957,717 + Dshi_2799 0.20 +0.5
2,958,028 + Dshi_2799 0.44 +1.3
2,958,046 - Dshi_2799 0.46 +0.5
2,958,046 - Dshi_2799 0.46 -0.2
2,958,178 - Dshi_2799 0.56 -0.5
2,958,215 + Dshi_2799 0.59 -2.3
2,958,418 + Dshi_2799 0.75 +1.5
2,958,437 - Dshi_2799 0.77 -3.4
2,958,468 + Dshi_2799 0.79 +0.1
2,958,474 + Dshi_2799 0.80 -2.3
2,958,486 + Dshi_2799 0.81 -1.0
2,958,500 + Dshi_2799 0.82 +0.5
2,958,646 + -0.7
2,958,669 + -1.5
2,958,751 + +1.5
2,958,814 + -2.6
2,958,920 + Dshi_2800 0.22 -2.3
2,958,933 - Dshi_2800 0.24 +0.5
2,958,953 + Dshi_2800 0.26 -2.8
2,958,972 + Dshi_2800 0.29 -1.3
2,959,118 - Dshi_2800 0.50 -1.1
2,959,168 - Dshi_2800 0.57 -3.3
2,959,266 + Dshi_2800 0.71 +0.7
2,959,266 + Dshi_2800 0.71 -1.1
2,959,305 + Dshi_2800 0.76 -1.8
2,959,313 - Dshi_2800 0.77 -0.1
2,959,450 - -1.1
2,959,525 - -3.3
2,959,575 + -0.3
2,959,653 - Dshi_2801 0.17 -1.4

Or see this region's nucleotide sequence