Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2789

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2787 and Dshi_2788 are separated by 53 nucleotidesDshi_2788 and Dshi_2789 are separated by 165 nucleotidesDshi_2789 and Dshi_2790 are separated by 84 nucleotides Dshi_2787: Dshi_2787 - hypothetical protein (RefSeq), at 2,946,619 to 2,947,284 _2787 Dshi_2788: Dshi_2788 - beta-lactamase domain protein (RefSeq), at 2,947,338 to 2,948,030 _2788 Dshi_2789: Dshi_2789 - CMP/dCMP deaminase zinc-binding (RefSeq), at 2,948,196 to 2,948,651 _2789 Dshi_2790: Dshi_2790 - RNA-binding S4 domain protein (RefSeq), at 2,948,736 to 2,949,704 _2790 Position (kb) 2948 2949Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2947.201 kb on + strand, within Dshi_2787at 2947.231 kb on - strandat 2947.243 kb on - strandat 2947.312 kb on - strandat 2947.351 kb on + strandat 2947.478 kb on - strand, within Dshi_2788at 2947.494 kb on - strand, within Dshi_2788at 2947.621 kb on - strand, within Dshi_2788at 2947.702 kb on - strand, within Dshi_2788at 2947.884 kb on + strand, within Dshi_2788at 2947.926 kb on + strand, within Dshi_2788at 2947.933 kb on + strand, within Dshi_2788at 2947.946 kb on + strand, within Dshi_2788at 2947.984 kb on + strandat 2947.997 kb on - strandat 2948.013 kb on - strandat 2948.017 kb on + strandat 2948.024 kb on + strandat 2948.060 kb on + strandat 2949.046 kb on - strand, within Dshi_2790at 2949.175 kb on - strand, within Dshi_2790at 2949.292 kb on + strand, within Dshi_2790at 2949.292 kb on + strand, within Dshi_2790at 2949.334 kb on + strand, within Dshi_2790at 2949.379 kb on + strand, within Dshi_2790at 2949.387 kb on - strand, within Dshi_2790at 2949.497 kb on + strand, within Dshi_2790at 2949.532 kb on + strand, within Dshi_2790at 2949.540 kb on - strand, within Dshi_2790at 2949.544 kb on + strand, within Dshi_2790at 2949.605 kb on + strand, within Dshi_2790

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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2,947,201 + Dshi_2787 0.87 -1.5
2,947,231 - -0.6
2,947,243 - -3.5
2,947,312 - -0.4
2,947,351 + +0.5
2,947,478 - Dshi_2788 0.20 -0.4
2,947,494 - Dshi_2788 0.23 -0.8
2,947,621 - Dshi_2788 0.41 -0.5
2,947,702 - Dshi_2788 0.53 +0.5
2,947,884 + Dshi_2788 0.79 -2.3
2,947,926 + Dshi_2788 0.85 -0.1
2,947,933 + Dshi_2788 0.86 +3.3
2,947,946 + Dshi_2788 0.88 -2.1
2,947,984 + +2.5
2,947,997 - +1.9
2,948,013 - +0.8
2,948,017 + -0.1
2,948,024 + -2.8
2,948,060 + -1.7
2,949,046 - Dshi_2790 0.32 -2.3
2,949,175 - Dshi_2790 0.45 -1.5
2,949,292 + Dshi_2790 0.57 -2.5
2,949,292 + Dshi_2790 0.57 -2.0
2,949,334 + Dshi_2790 0.62 +0.5
2,949,379 + Dshi_2790 0.66 +2.5
2,949,387 - Dshi_2790 0.67 -1.1
2,949,497 + Dshi_2790 0.79 -1.8
2,949,532 + Dshi_2790 0.82 +0.5
2,949,540 - Dshi_2790 0.83 -1.4
2,949,544 + Dshi_2790 0.83 +0.5
2,949,605 + Dshi_2790 0.90 -1.4

Or see this region's nucleotide sequence