Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2762

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2761 and Dshi_2762 are separated by 119 nucleotidesDshi_2762 and Dshi_2763 are separated by 67 nucleotides Dshi_2761: Dshi_2761 - Citrate transporter (RefSeq), at 2,922,178 to 2,923,956 _2761 Dshi_2762: Dshi_2762 - protein of unknown function DUF28 (RefSeq), at 2,924,076 to 2,924,816 _2762 Dshi_2763: Dshi_2763 - Hemolysin-type calcium-binding region (RefSeq), at 2,924,884 to 2,926,548 _2763 Position (kb) 2924 2925Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2923.172 kb on - strand, within Dshi_2761at 2923.246 kb on + strand, within Dshi_2761at 2923.374 kb on - strand, within Dshi_2761at 2923.422 kb on - strand, within Dshi_2761at 2923.422 kb on - strand, within Dshi_2761at 2923.669 kb on - strand, within Dshi_2761at 2923.710 kb on + strand, within Dshi_2761at 2923.731 kb on - strand, within Dshi_2761at 2923.783 kb on - strandat 2923.855 kb on - strandat 2923.872 kb on - strandat 2923.947 kb on - strandat 2923.977 kb on - strandat 2923.996 kb on - strandat 2924.015 kb on - strandat 2924.020 kb on - strandat 2924.025 kb on - strandat 2924.040 kb on - strandat 2924.166 kb on - strand, within Dshi_2762at 2924.484 kb on + strand, within Dshi_2762at 2924.629 kb on - strand, within Dshi_2762at 2924.852 kb on + strandat 2924.888 kb on - strandat 2924.995 kb on - strandat 2925.438 kb on + strand, within Dshi_2763at 2925.454 kb on - strand, within Dshi_2763at 2925.530 kb on - strand, within Dshi_2763at 2925.608 kb on + strand, within Dshi_2763at 2925.608 kb on + strand, within Dshi_2763at 2925.650 kb on + strand, within Dshi_2763at 2925.650 kb on + strand, within Dshi_2763at 2925.711 kb on + strand, within Dshi_2763at 2925.810 kb on + strand, within Dshi_2763

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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2,923,172 - Dshi_2761 0.56 -1.4
2,923,246 + Dshi_2761 0.60 -0.6
2,923,374 - Dshi_2761 0.67 -1.5
2,923,422 - Dshi_2761 0.70 -0.8
2,923,422 - Dshi_2761 0.70 -0.8
2,923,669 - Dshi_2761 0.84 -0.7
2,923,710 + Dshi_2761 0.86 +0.5
2,923,731 - Dshi_2761 0.87 +0.2
2,923,783 - +0.5
2,923,855 - -0.2
2,923,872 - -0.7
2,923,947 - -1.5
2,923,977 - -1.1
2,923,996 - -1.2
2,924,015 - +0.5
2,924,020 - +0.5
2,924,025 - -1.1
2,924,040 - +1.0
2,924,166 - Dshi_2762 0.12 -2.1
2,924,484 + Dshi_2762 0.55 -3.0
2,924,629 - Dshi_2762 0.75 -1.1
2,924,852 + -0.8
2,924,888 - +2.1
2,924,995 - +0.0
2,925,438 + Dshi_2763 0.33 -0.3
2,925,454 - Dshi_2763 0.34 +1.1
2,925,530 - Dshi_2763 0.39 -0.7
2,925,608 + Dshi_2763 0.43 -1.5
2,925,608 + Dshi_2763 0.43 +2.3
2,925,650 + Dshi_2763 0.46 +0.8
2,925,650 + Dshi_2763 0.46 +0.9
2,925,711 + Dshi_2763 0.50 +0.5
2,925,810 + Dshi_2763 0.56 +0.8

Or see this region's nucleotide sequence