Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2745

Experiment: m.b. Cobalt chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_2744 and Dshi_2745 are separated by 60 nucleotidesDshi_2745 and Dshi_2746 are separated by 31 nucleotidesDshi_2746 and Dshi_2747 are separated by 121 nucleotides Dshi_2744: Dshi_2744 - CTP synthase (RefSeq), at 2,905,872 to 2,907,515 _2744 Dshi_2745: Dshi_2745 - phenazine biosynthesis protein PhzF family (RefSeq), at 2,907,576 to 2,908,436 _2745 Dshi_2746: Dshi_2746 - hypothetical protein (RefSeq), at 2,908,468 to 2,908,728 _2746 Dshi_2747: Dshi_2747 - hypothetical protein (RefSeq), at 2,908,850 to 2,909,440 _2747 Position (kb) 2907 2908 2909Strain fitness (log2 ratio) -2 -1 0 1 2at 2907.610 kb on + strandat 2907.677 kb on + strand, within Dshi_2745at 2907.824 kb on + strand, within Dshi_2745at 2907.921 kb on - strand, within Dshi_2745at 2907.935 kb on - strand, within Dshi_2745at 2907.939 kb on + strand, within Dshi_2745at 2908.113 kb on + strand, within Dshi_2745at 2908.397 kb on + strandat 2908.466 kb on + strandat 2908.687 kb on - strand, within Dshi_2746at 2908.780 kb on + strandat 2908.780 kb on + strandat 2908.780 kb on + strandat 2908.780 kb on + strandat 2908.780 kb on + strandat 2908.780 kb on + strandat 2908.788 kb on - strandat 2908.921 kb on - strand, within Dshi_2747at 2908.928 kb on - strand, within Dshi_2747at 2909.058 kb on + strand, within Dshi_2747at 2909.135 kb on - strand, within Dshi_2747at 2909.363 kb on + strand, within Dshi_2747

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
remove
2,907,610 + -1.1
2,907,677 + Dshi_2745 0.12 -0.5
2,907,824 + Dshi_2745 0.29 +2.0
2,907,921 - Dshi_2745 0.40 +0.5
2,907,935 - Dshi_2745 0.42 -1.3
2,907,939 + Dshi_2745 0.42 -2.7
2,908,113 + Dshi_2745 0.62 -1.9
2,908,397 + -1.5
2,908,466 + -1.1
2,908,687 - Dshi_2746 0.84 -1.7
2,908,780 + +1.0
2,908,780 + +0.5
2,908,780 + -0.5
2,908,780 + -1.1
2,908,780 + -0.2
2,908,780 + +1.5
2,908,788 - -1.1
2,908,921 - Dshi_2747 0.12 -1.1
2,908,928 - Dshi_2747 0.13 -1.1
2,909,058 + Dshi_2747 0.35 -1.9
2,909,135 - Dshi_2747 0.48 -0.5
2,909,363 + Dshi_2747 0.87 -1.4

Or see this region's nucleotide sequence