Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2664 and Dshi_2665 are separated by 62 nucleotides Dshi_2665 and Dshi_2666 are separated by 106 nucleotides Dshi_2666 and Dshi_2667 are separated by 6 nucleotides
Dshi_2664: Dshi_2664 - hypothetical protein (RefSeq), at 2,820,907 to 2,822,067
_2664
Dshi_2665: Dshi_2665 - 40-residue YVTN family beta-propeller repeat protein (RefSeq), at 2,822,130 to 2,823,107
_2665
Dshi_2666: Dshi_2666 - hypothetical protein (RefSeq), at 2,823,214 to 2,823,660
_2666
Dshi_2667: Dshi_2667 - ABC transporter related (RefSeq), at 2,823,667 to 2,824,386
_2667
Position (kb)
2822
2823
2824 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2821.148 kb on - strand, within Dshi_2664 at 2821.244 kb on + strand, within Dshi_2664 at 2821.366 kb on - strand, within Dshi_2664 at 2821.410 kb on + strand, within Dshi_2664 at 2821.432 kb on + strand, within Dshi_2664 at 2821.532 kb on - strand, within Dshi_2664 at 2821.544 kb on + strand, within Dshi_2664 at 2821.587 kb on + strand, within Dshi_2664 at 2821.725 kb on - strand, within Dshi_2664 at 2821.782 kb on - strand, within Dshi_2664 at 2821.880 kb on - strand, within Dshi_2664 at 2821.958 kb on + strand at 2821.983 kb on + strand at 2822.035 kb on - strand at 2822.069 kb on - strand at 2822.099 kb on + strand at 2822.128 kb on + strand at 2822.195 kb on - strand at 2822.207 kb on - strand at 2822.258 kb on + strand, within Dshi_2665 at 2822.265 kb on - strand, within Dshi_2665 at 2822.275 kb on - strand, within Dshi_2665 at 2822.310 kb on - strand, within Dshi_2665 at 2822.327 kb on - strand, within Dshi_2665 at 2822.374 kb on - strand, within Dshi_2665 at 2822.412 kb on + strand, within Dshi_2665 at 2822.436 kb on - strand, within Dshi_2665 at 2822.716 kb on - strand, within Dshi_2665 at 2822.747 kb on + strand, within Dshi_2665 at 2822.760 kb on - strand, within Dshi_2665 at 2822.816 kb on + strand, within Dshi_2665 at 2822.824 kb on - strand, within Dshi_2665 at 2822.860 kb on + strand, within Dshi_2665 at 2822.861 kb on - strand, within Dshi_2665 at 2822.861 kb on - strand, within Dshi_2665 at 2823.069 kb on - strand at 2823.092 kb on + strand at 2823.168 kb on + strand at 2823.253 kb on - strand at 2823.339 kb on + strand, within Dshi_2666 at 2823.395 kb on - strand, within Dshi_2666 at 2823.412 kb on - strand, within Dshi_2666 at 2823.443 kb on + strand, within Dshi_2666 at 2823.589 kb on - strand, within Dshi_2666 at 2823.596 kb on + strand, within Dshi_2666 at 2823.626 kb on - strand at 2823.628 kb on - strand at 2823.850 kb on - strand, within Dshi_2667 at 2823.865 kb on - strand, within Dshi_2667 at 2823.930 kb on - strand, within Dshi_2667 at 2823.931 kb on - strand, within Dshi_2667
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 2,821,148 - Dshi_2664 0.21 -1.9 2,821,244 + Dshi_2664 0.29 -2.5 2,821,366 - Dshi_2664 0.40 -1.7 2,821,410 + Dshi_2664 0.43 -0.1 2,821,432 + Dshi_2664 0.45 +3.8 2,821,532 - Dshi_2664 0.54 -1.7 2,821,544 + Dshi_2664 0.55 -0.7 2,821,587 + Dshi_2664 0.59 -3.7 2,821,725 - Dshi_2664 0.70 -0.7 2,821,782 - Dshi_2664 0.75 -0.2 2,821,880 - Dshi_2664 0.84 -1.5 2,821,958 + -1.8 2,821,983 + -0.9 2,822,035 - -1.2 2,822,069 - -2.2 2,822,099 + -0.1 2,822,128 + -1.2 2,822,195 - -2.0 2,822,207 - -1.7 2,822,258 + Dshi_2665 0.13 -1.3 2,822,265 - Dshi_2665 0.14 -0.7 2,822,275 - Dshi_2665 0.15 -2.7 2,822,310 - Dshi_2665 0.18 -2.1 2,822,327 - Dshi_2665 0.20 -2.4 2,822,374 - Dshi_2665 0.25 +0.3 2,822,412 + Dshi_2665 0.29 -2.0 2,822,436 - Dshi_2665 0.31 -1.8 2,822,716 - Dshi_2665 0.60 -1.6 2,822,747 + Dshi_2665 0.63 -0.7 2,822,760 - Dshi_2665 0.64 -0.1 2,822,816 + Dshi_2665 0.70 +0.3 2,822,824 - Dshi_2665 0.71 -0.7 2,822,860 + Dshi_2665 0.75 -1.7 2,822,861 - Dshi_2665 0.75 -0.6 2,822,861 - Dshi_2665 0.75 -1.3 2,823,069 - +0.4 2,823,092 + +0.4 2,823,168 + -1.6 2,823,253 - -0.3 2,823,339 + Dshi_2666 0.28 -0.6 2,823,395 - Dshi_2666 0.40 -3.0 2,823,412 - Dshi_2666 0.44 +1.6 2,823,443 + Dshi_2666 0.51 -3.3 2,823,589 - Dshi_2666 0.84 -0.2 2,823,596 + Dshi_2666 0.85 -2.4 2,823,626 - +2.4 2,823,628 - -0.2 2,823,850 - Dshi_2667 0.25 -1.3 2,823,865 - Dshi_2667 0.28 -1.2 2,823,930 - Dshi_2667 0.37 -1.6 2,823,931 - Dshi_2667 0.37 -0.3
Or see this region's nucleotide sequence