Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2665

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2664 and Dshi_2665 are separated by 62 nucleotidesDshi_2665 and Dshi_2666 are separated by 106 nucleotidesDshi_2666 and Dshi_2667 are separated by 6 nucleotides Dshi_2664: Dshi_2664 - hypothetical protein (RefSeq), at 2,820,907 to 2,822,067 _2664 Dshi_2665: Dshi_2665 - 40-residue YVTN family beta-propeller repeat protein (RefSeq), at 2,822,130 to 2,823,107 _2665 Dshi_2666: Dshi_2666 - hypothetical protein (RefSeq), at 2,823,214 to 2,823,660 _2666 Dshi_2667: Dshi_2667 - ABC transporter related (RefSeq), at 2,823,667 to 2,824,386 _2667 Position (kb) 2822 2823 2824Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2821.148 kb on - strand, within Dshi_2664at 2821.244 kb on + strand, within Dshi_2664at 2821.366 kb on - strand, within Dshi_2664at 2821.410 kb on + strand, within Dshi_2664at 2821.432 kb on + strand, within Dshi_2664at 2821.532 kb on - strand, within Dshi_2664at 2821.544 kb on + strand, within Dshi_2664at 2821.587 kb on + strand, within Dshi_2664at 2821.725 kb on - strand, within Dshi_2664at 2821.782 kb on - strand, within Dshi_2664at 2821.880 kb on - strand, within Dshi_2664at 2821.958 kb on + strandat 2821.983 kb on + strandat 2822.035 kb on - strandat 2822.069 kb on - strandat 2822.099 kb on + strandat 2822.128 kb on + strandat 2822.195 kb on - strandat 2822.207 kb on - strandat 2822.258 kb on + strand, within Dshi_2665at 2822.265 kb on - strand, within Dshi_2665at 2822.275 kb on - strand, within Dshi_2665at 2822.310 kb on - strand, within Dshi_2665at 2822.327 kb on - strand, within Dshi_2665at 2822.374 kb on - strand, within Dshi_2665at 2822.412 kb on + strand, within Dshi_2665at 2822.436 kb on - strand, within Dshi_2665at 2822.716 kb on - strand, within Dshi_2665at 2822.747 kb on + strand, within Dshi_2665at 2822.760 kb on - strand, within Dshi_2665at 2822.816 kb on + strand, within Dshi_2665at 2822.824 kb on - strand, within Dshi_2665at 2822.860 kb on + strand, within Dshi_2665at 2822.861 kb on - strand, within Dshi_2665at 2822.861 kb on - strand, within Dshi_2665at 2823.069 kb on - strandat 2823.092 kb on + strandat 2823.168 kb on + strandat 2823.253 kb on - strandat 2823.339 kb on + strand, within Dshi_2666at 2823.395 kb on - strand, within Dshi_2666at 2823.412 kb on - strand, within Dshi_2666at 2823.443 kb on + strand, within Dshi_2666at 2823.589 kb on - strand, within Dshi_2666at 2823.596 kb on + strand, within Dshi_2666at 2823.626 kb on - strandat 2823.628 kb on - strandat 2823.850 kb on - strand, within Dshi_2667at 2823.865 kb on - strand, within Dshi_2667at 2823.930 kb on - strand, within Dshi_2667at 2823.931 kb on - strand, within Dshi_2667

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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2,821,148 - Dshi_2664 0.21 -1.9
2,821,244 + Dshi_2664 0.29 -2.5
2,821,366 - Dshi_2664 0.40 -1.7
2,821,410 + Dshi_2664 0.43 -0.1
2,821,432 + Dshi_2664 0.45 +3.8
2,821,532 - Dshi_2664 0.54 -1.7
2,821,544 + Dshi_2664 0.55 -0.7
2,821,587 + Dshi_2664 0.59 -3.7
2,821,725 - Dshi_2664 0.70 -0.7
2,821,782 - Dshi_2664 0.75 -0.2
2,821,880 - Dshi_2664 0.84 -1.5
2,821,958 + -1.8
2,821,983 + -0.9
2,822,035 - -1.2
2,822,069 - -2.2
2,822,099 + -0.1
2,822,128 + -1.2
2,822,195 - -2.0
2,822,207 - -1.7
2,822,258 + Dshi_2665 0.13 -1.3
2,822,265 - Dshi_2665 0.14 -0.7
2,822,275 - Dshi_2665 0.15 -2.7
2,822,310 - Dshi_2665 0.18 -2.1
2,822,327 - Dshi_2665 0.20 -2.4
2,822,374 - Dshi_2665 0.25 +0.3
2,822,412 + Dshi_2665 0.29 -2.0
2,822,436 - Dshi_2665 0.31 -1.8
2,822,716 - Dshi_2665 0.60 -1.6
2,822,747 + Dshi_2665 0.63 -0.7
2,822,760 - Dshi_2665 0.64 -0.1
2,822,816 + Dshi_2665 0.70 +0.3
2,822,824 - Dshi_2665 0.71 -0.7
2,822,860 + Dshi_2665 0.75 -1.7
2,822,861 - Dshi_2665 0.75 -0.6
2,822,861 - Dshi_2665 0.75 -1.3
2,823,069 - +0.4
2,823,092 + +0.4
2,823,168 + -1.6
2,823,253 - -0.3
2,823,339 + Dshi_2666 0.28 -0.6
2,823,395 - Dshi_2666 0.40 -3.0
2,823,412 - Dshi_2666 0.44 +1.6
2,823,443 + Dshi_2666 0.51 -3.3
2,823,589 - Dshi_2666 0.84 -0.2
2,823,596 + Dshi_2666 0.85 -2.4
2,823,626 - +2.4
2,823,628 - -0.2
2,823,850 - Dshi_2667 0.25 -1.3
2,823,865 - Dshi_2667 0.28 -1.2
2,823,930 - Dshi_2667 0.37 -1.6
2,823,931 - Dshi_2667 0.37 -0.3

Or see this region's nucleotide sequence