Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2586

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2584 and Dshi_2585 are separated by 43 nucleotidesDshi_2585 and Dshi_2586 are separated by 18 nucleotidesDshi_2586 and Dshi_2587 are separated by 289 nucleotides Dshi_2584: Dshi_2584 - hypothetical protein (RefSeq), at 2,750,551 to 2,750,907 _2584 Dshi_2585: Dshi_2585 - protein of unknown function DUF461 (RefSeq), at 2,750,951 to 2,751,463 _2585 Dshi_2586: Dshi_2586 - HpcH/HpaI aldolase (RefSeq), at 2,751,482 to 2,752,237 _2586 Dshi_2587: Dshi_2587 - DNA damage response exonuclease, associated with a ligase (from data), at 2,752,527 to 2,753,555 _2587 Position (kb) 2751 2752 2753Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2750.616 kb on + strand, within Dshi_2584at 2750.858 kb on - strand, within Dshi_2584at 2750.930 kb on + strandat 2750.935 kb on + strandat 2751.220 kb on - strand, within Dshi_2585at 2751.254 kb on + strand, within Dshi_2585at 2751.344 kb on - strand, within Dshi_2585at 2751.379 kb on + strand, within Dshi_2585at 2751.421 kb on - strandat 2751.629 kb on + strand, within Dshi_2586at 2751.648 kb on + strand, within Dshi_2586at 2751.833 kb on + strand, within Dshi_2586at 2752.255 kb on - strandat 2752.350 kb on - strandat 2752.444 kb on + strandat 2752.444 kb on + strandat 2752.452 kb on - strandat 2752.452 kb on - strandat 2752.510 kb on + strandat 2752.620 kb on + strandat 2752.639 kb on - strand, within Dshi_2587at 2752.641 kb on + strand, within Dshi_2587at 2752.649 kb on - strand, within Dshi_2587at 2752.654 kb on - strand, within Dshi_2587at 2752.751 kb on - strand, within Dshi_2587at 2752.797 kb on + strandat 2752.859 kb on + strand, within Dshi_2587at 2752.892 kb on + strand, within Dshi_2587at 2752.892 kb on + strand, within Dshi_2587at 2752.892 kb on + strand, within Dshi_2587at 2752.892 kb on + strand, within Dshi_2587at 2753.059 kb on - strand, within Dshi_2587at 2753.086 kb on - strand, within Dshi_2587at 2753.131 kb on + strand, within Dshi_2587at 2753.131 kb on + strand, within Dshi_2587at 2753.154 kb on - strand, within Dshi_2587at 2753.170 kb on - strand, within Dshi_2587at 2753.180 kb on - strand, within Dshi_2587at 2753.192 kb on - strand, within Dshi_2587at 2753.202 kb on + strand, within Dshi_2587at 2753.232 kb on + strand, within Dshi_2587

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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2,750,616 + Dshi_2584 0.18 -0.7
2,750,858 - Dshi_2584 0.86 -2.7
2,750,930 + -1.3
2,750,935 + +1.9
2,751,220 - Dshi_2585 0.52 -0.7
2,751,254 + Dshi_2585 0.59 -1.4
2,751,344 - Dshi_2585 0.77 +1.9
2,751,379 + Dshi_2585 0.83 -3.3
2,751,421 - +1.3
2,751,629 + Dshi_2586 0.19 -0.0
2,751,648 + Dshi_2586 0.22 -2.3
2,751,833 + Dshi_2586 0.46 -2.0
2,752,255 - -3.0
2,752,350 - +0.3
2,752,444 + -3.1
2,752,444 + +0.3
2,752,452 - +0.3
2,752,452 - +0.3
2,752,510 + +0.3
2,752,620 + -1.8
2,752,639 - Dshi_2587 0.11 -1.1
2,752,641 + Dshi_2587 0.11 -0.7
2,752,649 - Dshi_2587 0.12 -2.9
2,752,654 - Dshi_2587 0.12 +0.3
2,752,751 - Dshi_2587 0.22 +0.9
2,752,797 + +0.3
2,752,859 + Dshi_2587 0.32 -1.3
2,752,892 + Dshi_2587 0.35 +0.3
2,752,892 + Dshi_2587 0.35 +0.3
2,752,892 + Dshi_2587 0.35 +0.3
2,752,892 + Dshi_2587 0.35 -0.9
2,753,059 - Dshi_2587 0.52 +0.3
2,753,086 - Dshi_2587 0.54 -2.7
2,753,131 + Dshi_2587 0.59 -2.7
2,753,131 + Dshi_2587 0.59 +0.3
2,753,154 - Dshi_2587 0.61 -0.2
2,753,170 - Dshi_2587 0.62 -2.9
2,753,180 - Dshi_2587 0.63 -0.1
2,753,192 - Dshi_2587 0.65 +0.3
2,753,202 + Dshi_2587 0.66 -2.3
2,753,232 + Dshi_2587 0.69 -1.7

Or see this region's nucleotide sequence