Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2393

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2392 and Dshi_2393 are separated by 232 nucleotidesDshi_2393 and Dshi_2394 are separated by 240 nucleotidesDshi_2394 and Dshi_2395 overlap by 4 nucleotides Dshi_2392: Dshi_2392 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (RefSeq), at 2,525,802 to 2,527,001 _2392 Dshi_2393: Dshi_2393 - aminotransferase family protein, putative (RefSeq), at 2,527,234 to 2,528,364 _2393 Dshi_2394: Dshi_2394 - transcriptional regulator, AsnC family (RefSeq), at 2,528,605 to 2,529,063 _2394 Dshi_2395: Dshi_2395 - transcriptional regulator, AsnC family (RefSeq), at 2,529,060 to 2,529,518 _2395 Position (kb) 2527 2528 2529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2527.018 kb on - strandat 2527.237 kb on + strandat 2527.252 kb on - strandat 2527.465 kb on - strand, within Dshi_2393at 2527.563 kb on - strand, within Dshi_2393at 2527.685 kb on - strand, within Dshi_2393at 2527.772 kb on + strand, within Dshi_2393at 2527.872 kb on + strand, within Dshi_2393at 2528.009 kb on + strand, within Dshi_2393at 2528.231 kb on + strand, within Dshi_2393at 2528.303 kb on - strandat 2528.310 kb on + strandat 2528.310 kb on - strandat 2528.313 kb on - strandat 2528.313 kb on - strandat 2528.345 kb on + strandat 2528.367 kb on - strandat 2528.381 kb on - strandat 2528.381 kb on - strandat 2528.552 kb on + strandat 2528.578 kb on + strandat 2529.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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2,527,018 - -0.8
2,527,237 + -2.1
2,527,252 - +0.2
2,527,465 - Dshi_2393 0.20 -3.6
2,527,563 - Dshi_2393 0.29 +1.2
2,527,685 - Dshi_2393 0.40 -0.8
2,527,772 + Dshi_2393 0.48 +0.2
2,527,872 + Dshi_2393 0.56 +3.1
2,528,009 + Dshi_2393 0.69 -0.9
2,528,231 + Dshi_2393 0.88 -2.2
2,528,303 - -2.0
2,528,310 + -1.3
2,528,310 - -1.9
2,528,313 - -2.3
2,528,313 - +0.2
2,528,345 + +1.0
2,528,367 - +1.8
2,528,381 - -0.9
2,528,381 - -0.8
2,528,552 + -1.8
2,528,578 + -3.2
2,529,038 + -0.8

Or see this region's nucleotide sequence