Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2089

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2088 and Dshi_2089 are separated by 87 nucleotidesDshi_2089 and Dshi_2090 overlap by 4 nucleotides Dshi_2088: Dshi_2088 - aminotransferase class I and II (RefSeq), at 2,212,787 to 2,213,905 _2088 Dshi_2089: Dshi_2089 - hypothetical protein (RefSeq), at 2,213,993 to 2,214,208 _2089 Dshi_2090: Dshi_2090 - Serine--glyoxylate transaminase (RefSeq), at 2,214,205 to 2,215,461 _2090 Position (kb) 2213 2214 2215Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2213.134 kb on - strand, within Dshi_2088at 2213.240 kb on + strand, within Dshi_2088at 2213.293 kb on + strand, within Dshi_2088at 2213.295 kb on - strand, within Dshi_2088at 2213.386 kb on - strand, within Dshi_2088at 2213.476 kb on + strand, within Dshi_2088at 2213.669 kb on + strand, within Dshi_2088at 2213.723 kb on + strand, within Dshi_2088at 2213.877 kb on - strandat 2214.050 kb on - strand, within Dshi_2089at 2214.271 kb on + strandat 2214.325 kb on - strandat 2214.411 kb on - strand, within Dshi_2090at 2214.536 kb on - strand, within Dshi_2090at 2214.650 kb on + strand, within Dshi_2090at 2214.704 kb on + strand, within Dshi_2090at 2214.708 kb on + strand, within Dshi_2090at 2214.742 kb on - strand, within Dshi_2090at 2214.988 kb on - strand, within Dshi_2090at 2215.066 kb on + strand, within Dshi_2090at 2215.074 kb on - strand, within Dshi_2090at 2215.159 kb on - strand, within Dshi_2090at 2215.192 kb on - strand, within Dshi_2090

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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2,213,134 - Dshi_2088 0.31 +2.6
2,213,240 + Dshi_2088 0.40 -1.9
2,213,293 + Dshi_2088 0.45 -0.3
2,213,295 - Dshi_2088 0.45 -2.0
2,213,386 - Dshi_2088 0.54 -2.0
2,213,476 + Dshi_2088 0.62 +0.3
2,213,669 + Dshi_2088 0.79 -0.9
2,213,723 + Dshi_2088 0.84 -3.2
2,213,877 - +0.6
2,214,050 - Dshi_2089 0.26 -2.3
2,214,271 + -1.3
2,214,325 - -1.7
2,214,411 - Dshi_2090 0.16 +2.4
2,214,536 - Dshi_2090 0.26 -2.7
2,214,650 + Dshi_2090 0.35 -0.4
2,214,704 + Dshi_2090 0.40 -2.1
2,214,708 + Dshi_2090 0.40 +1.5
2,214,742 - Dshi_2090 0.43 -1.3
2,214,988 - Dshi_2090 0.62 +0.9
2,215,066 + Dshi_2090 0.68 -2.3
2,215,074 - Dshi_2090 0.69 +1.6
2,215,159 - Dshi_2090 0.76 -0.7
2,215,192 - Dshi_2090 0.79 -2.3

Or see this region's nucleotide sequence