Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1809 and Dshi_1810 are separated by 101 nucleotides Dshi_1810 and Dshi_1811 are separated by 64 nucleotides
Dshi_1809: Dshi_1809 - excinuclease ABC, A subunit (RefSeq), at 1,883,361 to 1,886,222
_1809
Dshi_1810: Dshi_1810 - major facilitator superfamily MFS_1 (RefSeq), at 1,886,324 to 1,887,496
_1810
Dshi_1811: Dshi_1811 - dihydrolipoamide dehydrogenase (RefSeq), at 1,887,561 to 1,888,958
_1811
Position (kb)
1886
1887
1888 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1885.336 kb on - strand, within Dshi_1809 at 1885.383 kb on + strand, within Dshi_1809 at 1885.410 kb on - strand, within Dshi_1809 at 1885.535 kb on + strand, within Dshi_1809 at 1885.801 kb on - strand, within Dshi_1809 at 1885.862 kb on - strand, within Dshi_1809 at 1885.987 kb on - strand at 1886.252 kb on + strand at 1886.265 kb on - strand at 1886.314 kb on + strand at 1886.586 kb on + strand, within Dshi_1810 at 1886.698 kb on + strand, within Dshi_1810 at 1886.706 kb on - strand, within Dshi_1810 at 1886.911 kb on + strand, within Dshi_1810 at 1886.993 kb on - strand, within Dshi_1810 at 1887.056 kb on - strand, within Dshi_1810 at 1887.108 kb on + strand, within Dshi_1810 at 1887.347 kb on + strand, within Dshi_1810 at 1887.355 kb on - strand, within Dshi_1810 at 1887.645 kb on - strand at 1887.653 kb on - strand at 1887.691 kb on - strand at 1887.703 kb on - strand, within Dshi_1811 at 1887.843 kb on - strand, within Dshi_1811 at 1887.917 kb on + strand, within Dshi_1811 at 1888.412 kb on + strand, within Dshi_1811
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 1,885,336 - Dshi_1809 0.69 -0.8 1,885,383 + Dshi_1809 0.71 -0.4 1,885,410 - Dshi_1809 0.72 +0.2 1,885,535 + Dshi_1809 0.76 +0.2 1,885,801 - Dshi_1809 0.85 +0.2 1,885,862 - Dshi_1809 0.87 +2.2 1,885,987 - -0.0 1,886,252 + -2.6 1,886,265 - -0.9 1,886,314 + -1.8 1,886,586 + Dshi_1810 0.22 -0.8 1,886,698 + Dshi_1810 0.32 +0.2 1,886,706 - Dshi_1810 0.33 +0.2 1,886,911 + Dshi_1810 0.50 +0.2 1,886,993 - Dshi_1810 0.57 -0.6 1,887,056 - Dshi_1810 0.62 +2.2 1,887,108 + Dshi_1810 0.67 -2.8 1,887,347 + Dshi_1810 0.87 +0.2 1,887,355 - Dshi_1810 0.88 +2.6 1,887,645 - -0.9 1,887,653 - +0.2 1,887,691 - +3.2 1,887,703 - Dshi_1811 0.10 +0.2 1,887,843 - Dshi_1811 0.20 +0.2 1,887,917 + Dshi_1811 0.25 -1.5 1,888,412 + Dshi_1811 0.61 -2.2
Or see this region's nucleotide sequence