Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1796

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1795 and Dshi_1796 are separated by 47 nucleotidesDshi_1796 and Dshi_1797 are separated by 126 nucleotides Dshi_1795: Dshi_1795 - putative peptidyl-prolyl cis-trans isomerse D (RefSeq), at 1,865,219 to 1,867,063 _1795 Dshi_1796: Dshi_1796 - anthranilate synthase component I (RefSeq), at 1,867,111 to 1,868,640 _1796 Dshi_1797: Dshi_1797 - protein of unknown function DUF610, YibQ (RefSeq), at 1,868,767 to 1,870,593 _1797 Position (kb) 1867 1868 1869Strain fitness (log2 ratio) -3 -2 -1 0 1at 1866.794 kb on - strand, within Dshi_1795at 1869.102 kb on + strandat 1869.321 kb on + strand, within Dshi_1797at 1869.321 kb on - strand, within Dshi_1797at 1869.347 kb on - strand, within Dshi_1797

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,866,794 - Dshi_1795 0.85 +0.2
1,869,102 + +0.2
1,869,321 + Dshi_1797 0.30 +0.2
1,869,321 - Dshi_1797 0.30 -3.2
1,869,347 - Dshi_1797 0.32 -2.8

Or see this region's nucleotide sequence