Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1704 and Dshi_1705 are separated by 28 nucleotides Dshi_1705 and Dshi_1706 overlap by 35 nucleotides Dshi_1706 and Dshi_1707 overlap by 1 nucleotides Dshi_1707 and Dshi_1708 are separated by 6 nucleotides
Dshi_1704: Dshi_1704 - periplasmic solute binding protein (RefSeq), at 1,772,514 to 1,773,584
_1704
Dshi_1705: Dshi_1705 - hypothetical protein (RefSeq), at 1,773,613 to 1,773,951
_1705
Dshi_1706: Dshi_1706 - methionine-R-sulfoxide reductase (RefSeq), at 1,773,917 to 1,774,366
_1706
Dshi_1707: Dshi_1707 - putative hemolysin (RefSeq), at 1,774,366 to 1,775,166
_1707
Dshi_1708: Dshi_1708 - NERD domain protein (RefSeq), at 1,775,173 to 1,775,952
_1708
Position (kb)
1773
1774
1775 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1773.205 kb on - strand at 1773.314 kb on - strand, within Dshi_1704 at 1773.364 kb on - strand, within Dshi_1704 at 1773.392 kb on + strand, within Dshi_1704 at 1773.445 kb on + strand, within Dshi_1704 at 1773.449 kb on + strand, within Dshi_1704 at 1773.476 kb on + strand, within Dshi_1704 at 1773.586 kb on - strand at 1773.618 kb on - strand at 1773.838 kb on + strand, within Dshi_1705 at 1773.851 kb on - strand, within Dshi_1705 at 1773.851 kb on - strand, within Dshi_1705 at 1773.858 kb on + strand, within Dshi_1705 at 1773.973 kb on + strand, within Dshi_1706 at 1773.997 kb on + strand, within Dshi_1706 at 1774.025 kb on + strand, within Dshi_1706 at 1774.265 kb on - strand, within Dshi_1706 at 1774.390 kb on - strand at 1774.392 kb on + strand at 1774.671 kb on + strand, within Dshi_1707 at 1774.763 kb on + strand, within Dshi_1707 at 1774.782 kb on - strand, within Dshi_1707
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 1,773,205 - +0.2 1,773,314 - Dshi_1704 0.75 -1.9 1,773,364 - Dshi_1704 0.79 -3.2 1,773,392 + Dshi_1704 0.82 -0.4 1,773,445 + Dshi_1704 0.87 -1.1 1,773,449 + Dshi_1704 0.87 +1.8 1,773,476 + Dshi_1704 0.90 +2.2 1,773,586 - -0.4 1,773,618 - +0.2 1,773,838 + Dshi_1705 0.66 -3.2 1,773,851 - Dshi_1705 0.70 +1.8 1,773,851 - Dshi_1705 0.70 +1.2 1,773,858 + Dshi_1705 0.72 +0.2 1,773,973 + Dshi_1706 0.12 -1.9 1,773,997 + Dshi_1706 0.18 +0.2 1,774,025 + Dshi_1706 0.24 +0.2 1,774,265 - Dshi_1706 0.77 -0.8 1,774,390 - +0.2 1,774,392 + -3.5 1,774,671 + Dshi_1707 0.38 -0.5 1,774,763 + Dshi_1707 0.50 -0.8 1,774,782 - Dshi_1707 0.52 +1.8
Or see this region's nucleotide sequence