Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1706

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1704 and Dshi_1705 are separated by 28 nucleotidesDshi_1705 and Dshi_1706 overlap by 35 nucleotidesDshi_1706 and Dshi_1707 overlap by 1 nucleotidesDshi_1707 and Dshi_1708 are separated by 6 nucleotides Dshi_1704: Dshi_1704 - periplasmic solute binding protein (RefSeq), at 1,772,514 to 1,773,584 _1704 Dshi_1705: Dshi_1705 - hypothetical protein (RefSeq), at 1,773,613 to 1,773,951 _1705 Dshi_1706: Dshi_1706 - methionine-R-sulfoxide reductase (RefSeq), at 1,773,917 to 1,774,366 _1706 Dshi_1707: Dshi_1707 - putative hemolysin (RefSeq), at 1,774,366 to 1,775,166 _1707 Dshi_1708: Dshi_1708 - NERD domain protein (RefSeq), at 1,775,173 to 1,775,952 _1708 Position (kb) 1773 1774 1775Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1773.205 kb on - strandat 1773.314 kb on - strand, within Dshi_1704at 1773.364 kb on - strand, within Dshi_1704at 1773.392 kb on + strand, within Dshi_1704at 1773.445 kb on + strand, within Dshi_1704at 1773.449 kb on + strand, within Dshi_1704at 1773.476 kb on + strand, within Dshi_1704at 1773.586 kb on - strandat 1773.618 kb on - strandat 1773.838 kb on + strand, within Dshi_1705at 1773.851 kb on - strand, within Dshi_1705at 1773.851 kb on - strand, within Dshi_1705at 1773.858 kb on + strand, within Dshi_1705at 1773.973 kb on + strand, within Dshi_1706at 1773.997 kb on + strand, within Dshi_1706at 1774.025 kb on + strand, within Dshi_1706at 1774.265 kb on - strand, within Dshi_1706at 1774.390 kb on - strandat 1774.392 kb on + strandat 1774.671 kb on + strand, within Dshi_1707at 1774.763 kb on + strand, within Dshi_1707at 1774.782 kb on - strand, within Dshi_1707

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,773,205 - +0.2
1,773,314 - Dshi_1704 0.75 -1.9
1,773,364 - Dshi_1704 0.79 -3.2
1,773,392 + Dshi_1704 0.82 -0.4
1,773,445 + Dshi_1704 0.87 -1.1
1,773,449 + Dshi_1704 0.87 +1.8
1,773,476 + Dshi_1704 0.90 +2.2
1,773,586 - -0.4
1,773,618 - +0.2
1,773,838 + Dshi_1705 0.66 -3.2
1,773,851 - Dshi_1705 0.70 +1.8
1,773,851 - Dshi_1705 0.70 +1.2
1,773,858 + Dshi_1705 0.72 +0.2
1,773,973 + Dshi_1706 0.12 -1.9
1,773,997 + Dshi_1706 0.18 +0.2
1,774,025 + Dshi_1706 0.24 +0.2
1,774,265 - Dshi_1706 0.77 -0.8
1,774,390 - +0.2
1,774,392 + -3.5
1,774,671 + Dshi_1707 0.38 -0.5
1,774,763 + Dshi_1707 0.50 -0.8
1,774,782 - Dshi_1707 0.52 +1.8

Or see this region's nucleotide sequence