Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1669 and Dshi_1670 overlap by 4 nucleotides Dshi_1670 and Dshi_1671 are separated by 16 nucleotides
Dshi_1669: Dshi_1669 - Nitrate reductase (EC 1.7.99.4) (from data) , at 1,736,304 to 1,738,925
_1669
Dshi_1670: Dshi_1670 - glycosyl transferase family 3 (RefSeq), at 1,738,922 to 1,739,893
_1670
Dshi_1671: Dshi_1671 - uroporphyrin-III C-methyltransferase (RefSeq), at 1,739,910 to 1,741,304
_1671
Position (kb)
1738
1739
1740 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1737.923 kb on + strand, within Dshi_1669 at 1737.992 kb on - strand, within Dshi_1669 at 1738.025 kb on + strand, within Dshi_1669 at 1738.177 kb on - strand, within Dshi_1669 at 1738.228 kb on + strand, within Dshi_1669 at 1738.282 kb on - strand, within Dshi_1669 at 1738.312 kb on + strand, within Dshi_1669 at 1738.398 kb on - strand, within Dshi_1669 at 1738.530 kb on - strand, within Dshi_1669 at 1738.951 kb on + strand at 1738.994 kb on - strand at 1739.018 kb on - strand at 1739.054 kb on + strand, within Dshi_1670 at 1739.056 kb on + strand, within Dshi_1670 at 1739.175 kb on + strand, within Dshi_1670 at 1739.249 kb on - strand, within Dshi_1670 at 1739.280 kb on - strand, within Dshi_1670 at 1739.303 kb on + strand, within Dshi_1670 at 1739.366 kb on - strand, within Dshi_1670 at 1739.607 kb on - strand, within Dshi_1670 at 1739.685 kb on - strand, within Dshi_1670 at 1739.833 kb on - strand at 1739.857 kb on + strand at 1739.910 kb on + strand at 1740.185 kb on + strand, within Dshi_1671 at 1740.214 kb on - strand, within Dshi_1671 at 1740.224 kb on + strand, within Dshi_1671 at 1740.240 kb on + strand, within Dshi_1671 at 1740.240 kb on + strand, within Dshi_1671 at 1740.248 kb on - strand, within Dshi_1671 at 1740.304 kb on + strand, within Dshi_1671 at 1740.463 kb on + strand, within Dshi_1671 at 1740.572 kb on + strand, within Dshi_1671 at 1740.582 kb on + strand, within Dshi_1671 at 1740.662 kb on + strand, within Dshi_1671 at 1740.752 kb on - strand, within Dshi_1671 at 1740.824 kb on + strand, within Dshi_1671 at 1740.828 kb on + strand, within Dshi_1671 at 1740.828 kb on + strand, within Dshi_1671
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 1,737,923 + Dshi_1669 0.62 +1.2 1,737,992 - Dshi_1669 0.64 -0.5 1,738,025 + Dshi_1669 0.66 +1.5 1,738,177 - Dshi_1669 0.71 -0.8 1,738,228 + Dshi_1669 0.73 -1.1 1,738,282 - Dshi_1669 0.75 -1.5 1,738,312 + Dshi_1669 0.77 -0.6 1,738,398 - Dshi_1669 0.80 -0.5 1,738,530 - Dshi_1669 0.85 +0.6 1,738,951 + -0.6 1,738,994 - -0.3 1,739,018 - +3.7 1,739,054 + Dshi_1670 0.14 -1.6 1,739,056 + Dshi_1670 0.14 -2.9 1,739,175 + Dshi_1670 0.26 -2.1 1,739,249 - Dshi_1670 0.34 +0.3 1,739,280 - Dshi_1670 0.37 -1.0 1,739,303 + Dshi_1670 0.39 -0.3 1,739,366 - Dshi_1670 0.46 -0.5 1,739,607 - Dshi_1670 0.70 +1.2 1,739,685 - Dshi_1670 0.78 +3.4 1,739,833 - +1.0 1,739,857 + -1.6 1,739,910 + -2.6 1,740,185 + Dshi_1671 0.20 +0.5 1,740,214 - Dshi_1671 0.22 -1.8 1,740,224 + Dshi_1671 0.23 -0.8 1,740,240 + Dshi_1671 0.24 -0.8 1,740,240 + Dshi_1671 0.24 +0.2 1,740,248 - Dshi_1671 0.24 -1.5 1,740,304 + Dshi_1671 0.28 -1.5 1,740,463 + Dshi_1671 0.40 +0.8 1,740,572 + Dshi_1671 0.47 -0.8 1,740,582 + Dshi_1671 0.48 -0.8 1,740,662 + Dshi_1671 0.54 -0.9 1,740,752 - Dshi_1671 0.60 -0.8 1,740,824 + Dshi_1671 0.66 -0.0 1,740,828 + Dshi_1671 0.66 -1.0 1,740,828 + Dshi_1671 0.66 -1.8
Or see this region's nucleotide sequence