Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1670

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1669 and Dshi_1670 overlap by 4 nucleotidesDshi_1670 and Dshi_1671 are separated by 16 nucleotides Dshi_1669: Dshi_1669 - Nitrate reductase (EC 1.7.99.4) (from data), at 1,736,304 to 1,738,925 _1669 Dshi_1670: Dshi_1670 - glycosyl transferase family 3 (RefSeq), at 1,738,922 to 1,739,893 _1670 Dshi_1671: Dshi_1671 - uroporphyrin-III C-methyltransferase (RefSeq), at 1,739,910 to 1,741,304 _1671 Position (kb) 1738 1739 1740Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1737.923 kb on + strand, within Dshi_1669at 1737.992 kb on - strand, within Dshi_1669at 1738.025 kb on + strand, within Dshi_1669at 1738.177 kb on - strand, within Dshi_1669at 1738.228 kb on + strand, within Dshi_1669at 1738.282 kb on - strand, within Dshi_1669at 1738.312 kb on + strand, within Dshi_1669at 1738.398 kb on - strand, within Dshi_1669at 1738.530 kb on - strand, within Dshi_1669at 1738.951 kb on + strandat 1738.994 kb on - strandat 1739.018 kb on - strandat 1739.054 kb on + strand, within Dshi_1670at 1739.056 kb on + strand, within Dshi_1670at 1739.175 kb on + strand, within Dshi_1670at 1739.249 kb on - strand, within Dshi_1670at 1739.280 kb on - strand, within Dshi_1670at 1739.303 kb on + strand, within Dshi_1670at 1739.366 kb on - strand, within Dshi_1670at 1739.607 kb on - strand, within Dshi_1670at 1739.685 kb on - strand, within Dshi_1670at 1739.833 kb on - strandat 1739.857 kb on + strandat 1739.910 kb on + strandat 1740.185 kb on + strand, within Dshi_1671at 1740.214 kb on - strand, within Dshi_1671at 1740.224 kb on + strand, within Dshi_1671at 1740.240 kb on + strand, within Dshi_1671at 1740.240 kb on + strand, within Dshi_1671at 1740.248 kb on - strand, within Dshi_1671at 1740.304 kb on + strand, within Dshi_1671at 1740.463 kb on + strand, within Dshi_1671at 1740.572 kb on + strand, within Dshi_1671at 1740.582 kb on + strand, within Dshi_1671at 1740.662 kb on + strand, within Dshi_1671at 1740.752 kb on - strand, within Dshi_1671at 1740.824 kb on + strand, within Dshi_1671at 1740.828 kb on + strand, within Dshi_1671at 1740.828 kb on + strand, within Dshi_1671

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,737,923 + Dshi_1669 0.62 +1.2
1,737,992 - Dshi_1669 0.64 -0.5
1,738,025 + Dshi_1669 0.66 +1.5
1,738,177 - Dshi_1669 0.71 -0.8
1,738,228 + Dshi_1669 0.73 -1.1
1,738,282 - Dshi_1669 0.75 -1.5
1,738,312 + Dshi_1669 0.77 -0.6
1,738,398 - Dshi_1669 0.80 -0.5
1,738,530 - Dshi_1669 0.85 +0.6
1,738,951 + -0.6
1,738,994 - -0.3
1,739,018 - +3.7
1,739,054 + Dshi_1670 0.14 -1.6
1,739,056 + Dshi_1670 0.14 -2.9
1,739,175 + Dshi_1670 0.26 -2.1
1,739,249 - Dshi_1670 0.34 +0.3
1,739,280 - Dshi_1670 0.37 -1.0
1,739,303 + Dshi_1670 0.39 -0.3
1,739,366 - Dshi_1670 0.46 -0.5
1,739,607 - Dshi_1670 0.70 +1.2
1,739,685 - Dshi_1670 0.78 +3.4
1,739,833 - +1.0
1,739,857 + -1.6
1,739,910 + -2.6
1,740,185 + Dshi_1671 0.20 +0.5
1,740,214 - Dshi_1671 0.22 -1.8
1,740,224 + Dshi_1671 0.23 -0.8
1,740,240 + Dshi_1671 0.24 -0.8
1,740,240 + Dshi_1671 0.24 +0.2
1,740,248 - Dshi_1671 0.24 -1.5
1,740,304 + Dshi_1671 0.28 -1.5
1,740,463 + Dshi_1671 0.40 +0.8
1,740,572 + Dshi_1671 0.47 -0.8
1,740,582 + Dshi_1671 0.48 -0.8
1,740,662 + Dshi_1671 0.54 -0.9
1,740,752 - Dshi_1671 0.60 -0.8
1,740,824 + Dshi_1671 0.66 -0.0
1,740,828 + Dshi_1671 0.66 -1.0
1,740,828 + Dshi_1671 0.66 -1.8

Or see this region's nucleotide sequence