Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1521

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1519 and Dshi_1520 are separated by 3 nucleotidesDshi_1520 and Dshi_1521 overlap by 4 nucleotidesDshi_1521 and Dshi_1522 are separated by 59 nucleotides Dshi_1519: Dshi_1519 - hypothetical protein (RefSeq), at 1,580,879 to 1,581,238 _1519 Dshi_1520: Dshi_1520 - ABC transporter related (RefSeq), at 1,581,242 to 1,582,075 _1520 Dshi_1521: Dshi_1521 - ABC transporter related (RefSeq), at 1,582,072 to 1,582,854 _1521 Dshi_1522: Dshi_1522 - Extracellular ligand-binding receptor (RefSeq), at 1,582,914 to 1,584,101 _1522 Position (kb) 1582 1583Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1581.397 kb on - strand, within Dshi_1520at 1581.537 kb on + strand, within Dshi_1520at 1581.752 kb on - strand, within Dshi_1520at 1582.000 kb on - strandat 1582.066 kb on + strandat 1582.103 kb on + strandat 1582.147 kb on - strandat 1582.147 kb on - strandat 1582.147 kb on - strandat 1582.311 kb on + strand, within Dshi_1521at 1582.320 kb on - strand, within Dshi_1521at 1582.586 kb on - strand, within Dshi_1521at 1582.618 kb on + strand, within Dshi_1521at 1582.875 kb on + strandat 1582.902 kb on - strandat 1582.930 kb on + strandat 1582.930 kb on + strandat 1582.995 kb on - strandat 1582.995 kb on - strandat 1583.101 kb on + strand, within Dshi_1522at 1583.394 kb on - strand, within Dshi_1522at 1583.814 kb on - strand, within Dshi_1522

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,581,397 - Dshi_1520 0.19 -0.4
1,581,537 + Dshi_1520 0.35 +0.2
1,581,752 - Dshi_1520 0.61 -3.5
1,582,000 - -0.9
1,582,066 + -0.6
1,582,103 + -1.4
1,582,147 - -1.8
1,582,147 - -3.4
1,582,147 - -0.7
1,582,311 + Dshi_1521 0.31 -4.4
1,582,320 - Dshi_1521 0.32 -1.2
1,582,586 - Dshi_1521 0.66 +0.5
1,582,618 + Dshi_1521 0.70 -2.8
1,582,875 + +1.1
1,582,902 - -0.4
1,582,930 + -1.9
1,582,930 + -0.9
1,582,995 - -0.9
1,582,995 - -1.8
1,583,101 + Dshi_1522 0.16 -1.8
1,583,394 - Dshi_1522 0.40 -2.1
1,583,814 - Dshi_1522 0.76 +0.1

Or see this region's nucleotide sequence