Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1517 and Dshi_1518 overlap by 4 nucleotides Dshi_1518 and Dshi_1519 overlap by 1 nucleotides Dshi_1519 and Dshi_1520 are separated by 3 nucleotides
Dshi_1517: Dshi_1517 - inner-membrane translocator (RefSeq), at 1,578,568 to 1,579,872
_1517
Dshi_1518: Dshi_1518 - inner-membrane translocator (RefSeq), at 1,579,869 to 1,580,879
_1518
Dshi_1519: Dshi_1519 - hypothetical protein (RefSeq), at 1,580,879 to 1,581,238
_1519
Dshi_1520: Dshi_1520 - ABC transporter related (RefSeq), at 1,581,242 to 1,582,075
_1520
Position (kb)
1579
1580
1581 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1579.114 kb on + strand, within Dshi_1517 at 1579.457 kb on + strand, within Dshi_1517 at 1579.581 kb on - strand, within Dshi_1517 at 1579.588 kb on - strand, within Dshi_1517 at 1579.686 kb on - strand, within Dshi_1517 at 1579.710 kb on - strand, within Dshi_1517 at 1579.845 kb on + strand at 1579.853 kb on - strand at 1579.853 kb on - strand at 1579.962 kb on - strand at 1580.092 kb on - strand, within Dshi_1518 at 1580.334 kb on - strand, within Dshi_1518 at 1580.388 kb on - strand, within Dshi_1518 at 1580.658 kb on - strand at 1580.747 kb on - strand, within Dshi_1518 at 1580.778 kb on - strand, within Dshi_1518 at 1580.969 kb on - strand at 1581.397 kb on - strand, within Dshi_1520 at 1581.537 kb on + strand, within Dshi_1520 at 1581.752 kb on - strand, within Dshi_1520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 1,579,114 + Dshi_1517 0.42 +0.2 1,579,457 + Dshi_1517 0.68 -1.4 1,579,581 - Dshi_1517 0.78 -1.0 1,579,588 - Dshi_1517 0.78 -2.4 1,579,686 - Dshi_1517 0.86 -4.0 1,579,710 - Dshi_1517 0.88 +0.2 1,579,845 + -0.7 1,579,853 - -2.1 1,579,853 - -2.0 1,579,962 - -0.4 1,580,092 - Dshi_1518 0.22 -2.6 1,580,334 - Dshi_1518 0.46 -0.4 1,580,388 - Dshi_1518 0.51 -3.7 1,580,658 - +0.2 1,580,747 - Dshi_1518 0.87 -1.4 1,580,778 - Dshi_1518 0.90 -0.1 1,580,969 - +0.2 1,581,397 - Dshi_1520 0.19 -0.4 1,581,537 + Dshi_1520 0.35 +0.2 1,581,752 - Dshi_1520 0.61 -3.5
Or see this region's nucleotide sequence