Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1518

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1517 and Dshi_1518 overlap by 4 nucleotidesDshi_1518 and Dshi_1519 overlap by 1 nucleotidesDshi_1519 and Dshi_1520 are separated by 3 nucleotides Dshi_1517: Dshi_1517 - inner-membrane translocator (RefSeq), at 1,578,568 to 1,579,872 _1517 Dshi_1518: Dshi_1518 - inner-membrane translocator (RefSeq), at 1,579,869 to 1,580,879 _1518 Dshi_1519: Dshi_1519 - hypothetical protein (RefSeq), at 1,580,879 to 1,581,238 _1519 Dshi_1520: Dshi_1520 - ABC transporter related (RefSeq), at 1,581,242 to 1,582,075 _1520 Position (kb) 1579 1580 1581Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1579.114 kb on + strand, within Dshi_1517at 1579.457 kb on + strand, within Dshi_1517at 1579.581 kb on - strand, within Dshi_1517at 1579.588 kb on - strand, within Dshi_1517at 1579.686 kb on - strand, within Dshi_1517at 1579.710 kb on - strand, within Dshi_1517at 1579.845 kb on + strandat 1579.853 kb on - strandat 1579.853 kb on - strandat 1579.962 kb on - strandat 1580.092 kb on - strand, within Dshi_1518at 1580.334 kb on - strand, within Dshi_1518at 1580.388 kb on - strand, within Dshi_1518at 1580.658 kb on - strandat 1580.747 kb on - strand, within Dshi_1518at 1580.778 kb on - strand, within Dshi_1518at 1580.969 kb on - strandat 1581.397 kb on - strand, within Dshi_1520at 1581.537 kb on + strand, within Dshi_1520at 1581.752 kb on - strand, within Dshi_1520

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,579,114 + Dshi_1517 0.42 +0.2
1,579,457 + Dshi_1517 0.68 -1.4
1,579,581 - Dshi_1517 0.78 -1.0
1,579,588 - Dshi_1517 0.78 -2.4
1,579,686 - Dshi_1517 0.86 -4.0
1,579,710 - Dshi_1517 0.88 +0.2
1,579,845 + -0.7
1,579,853 - -2.1
1,579,853 - -2.0
1,579,962 - -0.4
1,580,092 - Dshi_1518 0.22 -2.6
1,580,334 - Dshi_1518 0.46 -0.4
1,580,388 - Dshi_1518 0.51 -3.7
1,580,658 - +0.2
1,580,747 - Dshi_1518 0.87 -1.4
1,580,778 - Dshi_1518 0.90 -0.1
1,580,969 - +0.2
1,581,397 - Dshi_1520 0.19 -0.4
1,581,537 + Dshi_1520 0.35 +0.2
1,581,752 - Dshi_1520 0.61 -3.5

Or see this region's nucleotide sequence