Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1507 and Dshi_1508 are separated by 99 nucleotides Dshi_1508 and Dshi_1509 are separated by 39 nucleotides Dshi_1509 and Dshi_1510 overlap by 4 nucleotides
Dshi_1507: Dshi_1507 - protein of unknown function DUF1153 (RefSeq), at 1,567,599 to 1,567,877
_1507
Dshi_1508: Dshi_1508 - two component transcriptional regulator, winged helix family (RefSeq), at 1,567,977 to 1,568,690
_1508
Dshi_1509: Dshi_1509 - DNA ligase, NAD-dependent (RefSeq), at 1,568,730 to 1,570,955
_1509
Dshi_1510: Dshi_1510 - DEAD/DEAH box helicase domain protein (RefSeq), at 1,570,952 to 1,573,042
_1510
Position (kb)
1568
1569
1570
1571 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 1567.737 kb on - strand, within Dshi_1507 at 1567.740 kb on + strand, within Dshi_1507 at 1567.939 kb on + strand at 1567.947 kb on - strand at 1567.947 kb on - strand at 1567.969 kb on - strand at 1568.027 kb on - strand at 1568.031 kb on + strand at 1568.045 kb on - strand at 1568.062 kb on + strand, within Dshi_1508 at 1568.068 kb on - strand, within Dshi_1508 at 1568.068 kb on - strand, within Dshi_1508 at 1568.123 kb on + strand, within Dshi_1508 at 1568.136 kb on - strand, within Dshi_1508 at 1568.149 kb on - strand, within Dshi_1508 at 1568.168 kb on - strand, within Dshi_1508 at 1568.188 kb on - strand, within Dshi_1508 at 1568.275 kb on - strand, within Dshi_1508 at 1568.338 kb on - strand, within Dshi_1508 at 1568.415 kb on - strand, within Dshi_1508 at 1568.486 kb on - strand, within Dshi_1508 at 1568.698 kb on + strand at 1568.699 kb on - strand at 1568.701 kb on + strand at 1568.819 kb on + strand at 1568.829 kb on + strand at 1571.001 kb on - strand at 1571.079 kb on - strand at 1571.197 kb on - strand, within Dshi_1510 at 1571.373 kb on - strand, within Dshi_1510 at 1571.600 kb on - strand, within Dshi_1510 at 1571.620 kb on + strand, within Dshi_1510 at 1571.797 kb on + strand, within Dshi_1510
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 1,567,737 - Dshi_1507 0.49 +0.2 1,567,740 + Dshi_1507 0.51 -1.5 1,567,939 + -1.9 1,567,947 - +2.4 1,567,947 - +0.5 1,567,969 - +0.1 1,568,027 - -3.8 1,568,031 + -2.1 1,568,045 - -1.7 1,568,062 + Dshi_1508 0.12 -1.4 1,568,068 - Dshi_1508 0.13 +0.5 1,568,068 - Dshi_1508 0.13 +0.2 1,568,123 + Dshi_1508 0.20 +1.2 1,568,136 - Dshi_1508 0.22 +0.3 1,568,149 - Dshi_1508 0.24 +2.2 1,568,168 - Dshi_1508 0.27 -0.8 1,568,188 - Dshi_1508 0.30 -0.8 1,568,275 - Dshi_1508 0.42 +0.2 1,568,338 - Dshi_1508 0.51 +0.5 1,568,415 - Dshi_1508 0.61 -0.0 1,568,486 - Dshi_1508 0.71 -1.4 1,568,698 + -0.6 1,568,699 - -4.1 1,568,701 + +1.0 1,568,819 + -1.0 1,568,829 + +0.5 1,571,001 - -1.4 1,571,079 - -1.5 1,571,197 - Dshi_1510 0.12 +0.6 1,571,373 - Dshi_1510 0.20 +3.8 1,571,600 - Dshi_1510 0.31 +0.7 1,571,620 + Dshi_1510 0.32 -0.5 1,571,797 + Dshi_1510 0.40 +0.2
Or see this region's nucleotide sequence