Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1485

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1483 and Dshi_1484 are separated by 163 nucleotidesDshi_1484 and Dshi_1485 are separated by 187 nucleotidesDshi_1485 and Dshi_1486 are separated by 181 nucleotides Dshi_1483: Dshi_1483 - hypothetical protein (RefSeq), at 1,538,375 to 1,538,743 _1483 Dshi_1484: Dshi_1484 - hypothetical protein (RefSeq), at 1,538,907 to 1,539,512 _1484 Dshi_1485: Dshi_1485 - FAD dependent oxidoreductase (RefSeq), at 1,539,700 to 1,542,114 _1485 Dshi_1486: Dshi_1486 - BCCT transporter (RefSeq), at 1,542,296 to 1,544,161 _1486 Position (kb) 1539 1540 1541 1542 1543Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1539.008 kb on - strand, within Dshi_1484at 1539.146 kb on + strand, within Dshi_1484at 1539.254 kb on + strand, within Dshi_1484at 1539.426 kb on + strand, within Dshi_1484at 1539.487 kb on + strandat 1539.491 kb on + strandat 1539.612 kb on - strandat 1539.758 kb on - strandat 1539.802 kb on - strandat 1539.826 kb on + strandat 1539.924 kb on - strandat 1540.084 kb on - strand, within Dshi_1485at 1540.184 kb on - strand, within Dshi_1485at 1540.255 kb on + strand, within Dshi_1485at 1540.540 kb on + strand, within Dshi_1485at 1540.613 kb on + strand, within Dshi_1485at 1540.709 kb on - strand, within Dshi_1485at 1540.732 kb on - strand, within Dshi_1485at 1540.804 kb on + strand, within Dshi_1485at 1540.933 kb on + strand, within Dshi_1485at 1541.558 kb on + strand, within Dshi_1485at 1541.658 kb on + strand, within Dshi_1485at 1541.671 kb on + strand, within Dshi_1485at 1541.717 kb on + strand, within Dshi_1485at 1541.738 kb on + strand, within Dshi_1485at 1541.804 kb on + strand, within Dshi_1485at 1541.804 kb on + strand, within Dshi_1485at 1541.868 kb on - strand, within Dshi_1485at 1542.067 kb on + strandat 1542.067 kb on + strandat 1542.096 kb on + strandat 1542.281 kb on + strandat 1542.281 kb on - strandat 1542.344 kb on + strandat 1542.390 kb on + strandat 1542.509 kb on + strand, within Dshi_1486at 1542.855 kb on - strand, within Dshi_1486

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,539,008 - Dshi_1484 0.17 +1.8
1,539,146 + Dshi_1484 0.39 -1.8
1,539,254 + Dshi_1484 0.57 +0.2
1,539,426 + Dshi_1484 0.86 -0.8
1,539,487 + -1.4
1,539,491 + +1.2
1,539,612 - +3.0
1,539,758 - +0.2
1,539,802 - +0.2
1,539,826 + -1.8
1,539,924 - -1.8
1,540,084 - Dshi_1485 0.16 -2.6
1,540,184 - Dshi_1485 0.20 +0.6
1,540,255 + Dshi_1485 0.23 -2.1
1,540,540 + Dshi_1485 0.35 +0.1
1,540,613 + Dshi_1485 0.38 -1.0
1,540,709 - Dshi_1485 0.42 -2.7
1,540,732 - Dshi_1485 0.43 -1.4
1,540,804 + Dshi_1485 0.46 +0.2
1,540,933 + Dshi_1485 0.51 +0.0
1,541,558 + Dshi_1485 0.77 -0.8
1,541,658 + Dshi_1485 0.81 +0.6
1,541,671 + Dshi_1485 0.82 -1.8
1,541,717 + Dshi_1485 0.84 -2.0
1,541,738 + Dshi_1485 0.84 -1.8
1,541,804 + Dshi_1485 0.87 -0.8
1,541,804 + Dshi_1485 0.87 -0.7
1,541,868 - Dshi_1485 0.90 +0.1
1,542,067 + -1.8
1,542,067 + -1.0
1,542,096 + +1.2
1,542,281 + -1.4
1,542,281 - -2.1
1,542,344 + -0.5
1,542,390 + +1.2
1,542,509 + Dshi_1486 0.11 -1.7
1,542,855 - Dshi_1486 0.30 +0.0

Or see this region's nucleotide sequence