Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1182

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1181 and Dshi_1182 are separated by 197 nucleotidesDshi_1182 and Dshi_1183 are separated by 203 nucleotides Dshi_1181: Dshi_1181 - peptidase M20 (RefSeq), at 1,215,344 to 1,216,738 _1181 Dshi_1182: Dshi_1182 - 5-aminolevulinic acid synthase (RefSeq), at 1,216,936 to 1,218,159 _1182 Dshi_1183: Dshi_1183 - hypothetical protein (RefSeq), at 1,218,363 to 1,219,592 _1183 Position (kb) 1216 1217 1218 1219Strain fitness (log2 ratio) -2 -1 0 1 2at 1215.949 kb on + strand, within Dshi_1181at 1215.966 kb on - strand, within Dshi_1181at 1215.977 kb on - strand, within Dshi_1181at 1216.025 kb on - strand, within Dshi_1181at 1216.054 kb on + strand, within Dshi_1181at 1216.198 kb on + strand, within Dshi_1181at 1216.201 kb on - strand, within Dshi_1181at 1216.340 kb on - strand, within Dshi_1181at 1216.397 kb on - strand, within Dshi_1181at 1216.465 kb on - strand, within Dshi_1181at 1216.525 kb on - strand, within Dshi_1181at 1216.618 kb on + strandat 1216.886 kb on + strandat 1217.044 kb on + strandat 1217.206 kb on + strand, within Dshi_1182at 1217.422 kb on + strand, within Dshi_1182at 1217.573 kb on - strand, within Dshi_1182at 1217.732 kb on - strand, within Dshi_1182at 1217.846 kb on - strand, within Dshi_1182at 1217.974 kb on - strand, within Dshi_1182at 1218.038 kb on - strandat 1218.084 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,215,949 + Dshi_1181 0.43 +0.4
1,215,966 - Dshi_1181 0.45 +0.4
1,215,977 - Dshi_1181 0.45 -0.1
1,216,025 - Dshi_1181 0.49 -1.9
1,216,054 + Dshi_1181 0.51 -1.6
1,216,198 + Dshi_1181 0.61 -2.6
1,216,201 - Dshi_1181 0.61 -0.9
1,216,340 - Dshi_1181 0.71 -0.9
1,216,397 - Dshi_1181 0.75 -0.3
1,216,465 - Dshi_1181 0.80 +0.2
1,216,525 - Dshi_1181 0.85 +2.0
1,216,618 + -1.8
1,216,886 + -0.2
1,217,044 + -2.2
1,217,206 + Dshi_1182 0.22 +0.4
1,217,422 + Dshi_1182 0.40 +0.1
1,217,573 - Dshi_1182 0.52 +0.4
1,217,732 - Dshi_1182 0.65 -2.1
1,217,846 - Dshi_1182 0.74 -2.0
1,217,974 - Dshi_1182 0.85 -1.2
1,218,038 - -0.8
1,218,084 - +1.4

Or see this region's nucleotide sequence