Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1066

Experiment: m.b. Cobalt chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1064 and Dshi_1065 are separated by 379 nucleotidesDshi_1065 and Dshi_1066 are separated by 81 nucleotidesDshi_1066 and Dshi_1067 are separated by 278 nucleotidesDshi_1067 and Dshi_1068 are separated by 79 nucleotides Dshi_1064: Dshi_1064 - Holliday junction resolvase YqgF (RefSeq), at 1,097,236 to 1,097,727 _1064 Dshi_1065: Dshi_1065 - hypothetical protein (RefSeq), at 1,098,107 to 1,098,376 _1065 Dshi_1066: Dshi_1066 - hypothetical protein (RefSeq), at 1,098,458 to 1,098,886 _1066 Dshi_1067: Dshi_1067 - Superoxide dismutase (RefSeq), at 1,099,165 to 1,099,764 _1067 Dshi_1068: Dshi_1068 - hypothetical protein (RefSeq), at 1,099,844 to 1,100,293 _1068 Position (kb) 1098 1099Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1097.822 kb on - strandat 1097.896 kb on + strandat 1097.913 kb on - strandat 1098.012 kb on + strandat 1098.014 kb on + strandat 1098.091 kb on + strandat 1098.096 kb on - strandat 1098.098 kb on - strandat 1098.123 kb on + strandat 1098.133 kb on + strandat 1098.141 kb on - strand, within Dshi_1065at 1098.194 kb on + strand, within Dshi_1065at 1098.247 kb on - strand, within Dshi_1065at 1098.350 kb on + strandat 1098.500 kb on + strandat 1098.540 kb on + strand, within Dshi_1066at 1098.548 kb on - strand, within Dshi_1066at 1098.563 kb on - strand, within Dshi_1066at 1098.563 kb on - strand, within Dshi_1066at 1098.605 kb on - strand, within Dshi_1066at 1098.656 kb on + strand, within Dshi_1066at 1098.912 kb on + strandat 1098.978 kb on - strandat 1099.081 kb on + strandat 1099.138 kb on + strandat 1099.149 kb on + strandat 1099.260 kb on + strand, within Dshi_1067at 1099.484 kb on - strand, within Dshi_1067at 1099.561 kb on - strand, within Dshi_1067at 1099.561 kb on - strand, within Dshi_1067at 1099.562 kb on - strand, within Dshi_1067at 1099.583 kb on + strand, within Dshi_1067at 1099.588 kb on - strand, within Dshi_1067at 1099.761 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
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1,097,822 - +0.4
1,097,896 + -0.1
1,097,913 - +0.4
1,098,012 + +0.4
1,098,014 + -2.4
1,098,091 + -1.6
1,098,096 - -2.0
1,098,098 - -1.3
1,098,123 + +0.4
1,098,133 + +1.4
1,098,141 - Dshi_1065 0.13 -1.1
1,098,194 + Dshi_1065 0.32 +2.4
1,098,247 - Dshi_1065 0.52 +0.9
1,098,350 + -2.3
1,098,500 + -0.6
1,098,540 + Dshi_1066 0.19 +0.4
1,098,548 - Dshi_1066 0.21 -0.2
1,098,563 - Dshi_1066 0.24 +0.4
1,098,563 - Dshi_1066 0.24 -1.2
1,098,605 - Dshi_1066 0.34 -1.5
1,098,656 + Dshi_1066 0.46 -1.1
1,098,912 + -0.3
1,098,978 - +0.2
1,099,081 + -0.4
1,099,138 + -2.2
1,099,149 + -1.9
1,099,260 + Dshi_1067 0.16 +0.4
1,099,484 - Dshi_1067 0.53 -2.0
1,099,561 - Dshi_1067 0.66 -5.1
1,099,561 - Dshi_1067 0.66 -2.4
1,099,562 - Dshi_1067 0.66 -3.4
1,099,583 + Dshi_1067 0.70 -3.5
1,099,588 - Dshi_1067 0.70 -5.2
1,099,761 + -2.0

Or see this region's nucleotide sequence