Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1064 and Dshi_1065 are separated by 379 nucleotides Dshi_1065 and Dshi_1066 are separated by 81 nucleotides Dshi_1066 and Dshi_1067 are separated by 278 nucleotides Dshi_1067 and Dshi_1068 are separated by 79 nucleotides
Dshi_1064: Dshi_1064 - Holliday junction resolvase YqgF (RefSeq), at 1,097,236 to 1,097,727
_1064
Dshi_1065: Dshi_1065 - hypothetical protein (RefSeq), at 1,098,107 to 1,098,376
_1065
Dshi_1066: Dshi_1066 - hypothetical protein (RefSeq), at 1,098,458 to 1,098,886
_1066
Dshi_1067: Dshi_1067 - Superoxide dismutase (RefSeq), at 1,099,165 to 1,099,764
_1067
Dshi_1068: Dshi_1068 - hypothetical protein (RefSeq), at 1,099,844 to 1,100,293
_1068
Position (kb)
1098
1099 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1097.822 kb on - strand at 1097.896 kb on + strand at 1097.913 kb on - strand at 1098.012 kb on + strand at 1098.014 kb on + strand at 1098.091 kb on + strand at 1098.096 kb on - strand at 1098.098 kb on - strand at 1098.123 kb on + strand at 1098.133 kb on + strand at 1098.141 kb on - strand, within Dshi_1065 at 1098.194 kb on + strand, within Dshi_1065 at 1098.247 kb on - strand, within Dshi_1065 at 1098.350 kb on + strand at 1098.500 kb on + strand at 1098.540 kb on + strand, within Dshi_1066 at 1098.548 kb on - strand, within Dshi_1066 at 1098.563 kb on - strand, within Dshi_1066 at 1098.563 kb on - strand, within Dshi_1066 at 1098.605 kb on - strand, within Dshi_1066 at 1098.656 kb on + strand, within Dshi_1066 at 1098.912 kb on + strand at 1098.978 kb on - strand at 1099.081 kb on + strand at 1099.138 kb on + strand at 1099.149 kb on + strand at 1099.260 kb on + strand, within Dshi_1067 at 1099.484 kb on - strand, within Dshi_1067 at 1099.561 kb on - strand, within Dshi_1067 at 1099.561 kb on - strand, within Dshi_1067 at 1099.562 kb on - strand, within Dshi_1067 at 1099.583 kb on + strand, within Dshi_1067 at 1099.588 kb on - strand, within Dshi_1067 at 1099.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 1,097,822 - +0.4 1,097,896 + -0.1 1,097,913 - +0.4 1,098,012 + +0.4 1,098,014 + -2.4 1,098,091 + -1.6 1,098,096 - -2.0 1,098,098 - -1.3 1,098,123 + +0.4 1,098,133 + +1.4 1,098,141 - Dshi_1065 0.13 -1.1 1,098,194 + Dshi_1065 0.32 +2.4 1,098,247 - Dshi_1065 0.52 +0.9 1,098,350 + -2.3 1,098,500 + -0.6 1,098,540 + Dshi_1066 0.19 +0.4 1,098,548 - Dshi_1066 0.21 -0.2 1,098,563 - Dshi_1066 0.24 +0.4 1,098,563 - Dshi_1066 0.24 -1.2 1,098,605 - Dshi_1066 0.34 -1.5 1,098,656 + Dshi_1066 0.46 -1.1 1,098,912 + -0.3 1,098,978 - +0.2 1,099,081 + -0.4 1,099,138 + -2.2 1,099,149 + -1.9 1,099,260 + Dshi_1067 0.16 +0.4 1,099,484 - Dshi_1067 0.53 -2.0 1,099,561 - Dshi_1067 0.66 -5.1 1,099,561 - Dshi_1067 0.66 -2.4 1,099,562 - Dshi_1067 0.66 -3.4 1,099,583 + Dshi_1067 0.70 -3.5 1,099,588 - Dshi_1067 0.70 -5.2 1,099,761 + -2.0
Or see this region's nucleotide sequence