Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1062

Experiment: m.b. Cobalt chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1061 and Dshi_1062 are separated by 59 nucleotidesDshi_1062 and Dshi_1063 are separated by 79 nucleotidesDshi_1063 and Dshi_1064 overlap by 8 nucleotides Dshi_1061: Dshi_1061 - hypothetical protein (RefSeq), at 1,095,405 to 1,096,250 _1061 Dshi_1062: Dshi_1062 - Isoprenylcysteine carboxyl methyltransferase (RefSeq), at 1,096,310 to 1,096,927 _1062 Dshi_1063: Dshi_1063 - protein of unknown function DUF1289 (RefSeq), at 1,097,007 to 1,097,243 _1063 Dshi_1064: Dshi_1064 - Holliday junction resolvase YqgF (RefSeq), at 1,097,236 to 1,097,727 _1064 Position (kb) 1096 1097Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1095.403 kb on + strandat 1095.457 kb on + strandat 1095.490 kb on + strand, within Dshi_1061at 1095.984 kb on + strand, within Dshi_1061at 1096.083 kb on + strand, within Dshi_1061at 1096.140 kb on - strand, within Dshi_1061at 1096.190 kb on - strandat 1096.316 kb on - strandat 1096.343 kb on - strandat 1096.437 kb on - strand, within Dshi_1062at 1096.478 kb on + strand, within Dshi_1062at 1096.599 kb on + strand, within Dshi_1062at 1096.607 kb on - strand, within Dshi_1062at 1096.658 kb on + strand, within Dshi_1062at 1096.745 kb on - strand, within Dshi_1062at 1096.780 kb on - strand, within Dshi_1062at 1096.848 kb on - strand, within Dshi_1062at 1096.886 kb on - strandat 1096.936 kb on - strandat 1097.072 kb on + strand, within Dshi_1063at 1097.072 kb on + strand, within Dshi_1063at 1097.082 kb on + strand, within Dshi_1063at 1097.090 kb on - strand, within Dshi_1063at 1097.190 kb on + strand, within Dshi_1063at 1097.193 kb on - strand, within Dshi_1063at 1097.231 kb on + strandat 1097.231 kb on - strandat 1097.822 kb on - strandat 1097.896 kb on + strandat 1097.913 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM
remove
1,095,403 + -2.2
1,095,457 + -2.2
1,095,490 + Dshi_1061 0.10 -3.8
1,095,984 + Dshi_1061 0.68 -2.0
1,096,083 + Dshi_1061 0.80 -0.6
1,096,140 - Dshi_1061 0.87 -1.6
1,096,190 - +0.4
1,096,316 - -0.4
1,096,343 - +2.7
1,096,437 - Dshi_1062 0.21 +2.7
1,096,478 + Dshi_1062 0.27 -3.1
1,096,599 + Dshi_1062 0.47 +1.4
1,096,607 - Dshi_1062 0.48 +0.4
1,096,658 + Dshi_1062 0.56 +2.7
1,096,745 - Dshi_1062 0.70 -1.1
1,096,780 - Dshi_1062 0.76 +0.4
1,096,848 - Dshi_1062 0.87 +0.2
1,096,886 - +0.0
1,096,936 - +2.5
1,097,072 + Dshi_1063 0.27 -0.6
1,097,072 + Dshi_1063 0.27 +0.4
1,097,082 + Dshi_1063 0.32 -3.0
1,097,090 - Dshi_1063 0.35 -1.6
1,097,190 + Dshi_1063 0.77 -2.2
1,097,193 - Dshi_1063 0.78 +0.4
1,097,231 + +0.4
1,097,231 - -0.6
1,097,822 - +0.4
1,097,896 + -0.1
1,097,913 - +0.4

Or see this region's nucleotide sequence