Experiment: m.b. Cobalt chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1043 and Dshi_1044 are separated by 503 nucleotides Dshi_1044 and Dshi_1045 overlap by 4 nucleotides Dshi_1045 and Dshi_1046 overlap by 4 nucleotides
Dshi_1043: Dshi_1043 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,076,851 to 1,077,846
_1043
Dshi_1044: Dshi_1044 - transcriptional regulator, GntR family (RefSeq), at 1,078,350 to 1,079,054
_1044
Dshi_1045: Dshi_1045 - HpcH/HpaI aldolase (RefSeq), at 1,079,051 to 1,079,896
_1045
Dshi_1046: Dshi_1046 - Amidase (RefSeq), at 1,079,893 to 1,081,023
_1046
Position (kb)
1078
1079
1080 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1077.404 kb on - strand, within Dshi_1043 at 1077.627 kb on + strand, within Dshi_1043 at 1077.700 kb on - strand, within Dshi_1043 at 1077.784 kb on - strand at 1077.856 kb on + strand at 1077.857 kb on - strand at 1077.907 kb on - strand at 1077.965 kb on + strand at 1077.965 kb on + strand at 1078.232 kb on + strand at 1078.270 kb on + strand at 1078.334 kb on + strand at 1078.342 kb on - strand at 1078.556 kb on - strand, within Dshi_1044 at 1078.612 kb on - strand, within Dshi_1044 at 1078.630 kb on - strand, within Dshi_1044 at 1078.679 kb on - strand, within Dshi_1044 at 1078.735 kb on + strand, within Dshi_1044 at 1078.803 kb on - strand, within Dshi_1044 at 1078.933 kb on + strand, within Dshi_1044 at 1078.978 kb on + strand, within Dshi_1044 at 1079.034 kb on + strand at 1079.246 kb on + strand, within Dshi_1045 at 1079.782 kb on + strand, within Dshi_1045 at 1079.795 kb on + strand, within Dshi_1045 at 1079.802 kb on + strand, within Dshi_1045 at 1079.949 kb on + strand at 1079.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.5 mM remove 1,077,404 - Dshi_1043 0.56 -1.4 1,077,627 + Dshi_1043 0.78 +0.3 1,077,700 - Dshi_1043 0.85 +1.9 1,077,784 - +0.3 1,077,856 + -2.4 1,077,857 - +1.9 1,077,907 - +0.3 1,077,965 + -4.0 1,077,965 + -0.4 1,078,232 + +0.6 1,078,270 + -0.7 1,078,334 + +0.3 1,078,342 - -2.3 1,078,556 - Dshi_1044 0.29 -1.3 1,078,612 - Dshi_1044 0.37 -1.0 1,078,630 - Dshi_1044 0.40 -0.5 1,078,679 - Dshi_1044 0.47 -0.1 1,078,735 + Dshi_1044 0.55 -2.3 1,078,803 - Dshi_1044 0.64 -2.7 1,078,933 + Dshi_1044 0.83 -1.3 1,078,978 + Dshi_1044 0.89 -1.7 1,079,034 + +0.3 1,079,246 + Dshi_1045 0.23 -1.1 1,079,782 + Dshi_1045 0.86 +1.4 1,079,795 + Dshi_1045 0.88 -2.3 1,079,802 + Dshi_1045 0.89 -1.4 1,079,949 + -3.1 1,079,956 + -2.5
Or see this region's nucleotide sequence